PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA00g32460

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

SBP

Protein Properties

Length: 219aa MW: 24904.2 Da PI: 6.9918

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA00g32460	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	71.6	1.4e-22	170	217	2	49
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSE CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrf 49 Cq+egC+adl++ak+yhrrhkvCe+hska++v+++gl+qrfCqqCsr CA00g32460 170 CQAEGCNADLTHAKHYHRRHKVCEFHSKAATVVAAGLTQRFCQQCSRL 217 **********************************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	1.7E-24	164	216	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	20.256	167	218	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	2.49E-21	168	217	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	2.1E-16	170	217	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 219 aa Download sequence Send to blast
MLDYEWENQS TFIFPNDQTN QENEQNNNQF LDPHANFSPM TNYQHQQQQQ QQLQVQNSQF 60 PQYQVNPNNN QFNSLYDPRA YGVTYTNNTH ETSLLSLQPT GSSTGFMLMP KTEPQFGGGI 120 HDFSSTTTTR IGLNLGGRTY FASSSDDDFV NRLYRRTRTV EAGSLNTPKC QAEGCNADLT 180 HAKHYHRRHK VCEFHSKAAT VVAAGLTQRF CQQCSRLC*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj0_A	1e-17	170	217	6	53	squamosa promoter-binding protein-like 12
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. Binds specifically to the 5'-GTAC-3' core sequence. Involved in development and floral organogenesis. Required for ovule differentiation, pollen production, filament elongation, seed formation and siliques elongation. Also seems to play a role in the formation of trichomes on sepals. May positively modulate gibberellin (GA) signaling in flower. {ECO:0000269\|PubMed:12671094, ECO:0000269\|PubMed:16095614, ECO:0000269\|PubMed:17093870}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016544498.1	1e-137	PREDICTED: squamosa promoter-binding-like protein 8
Refseq	XP_016544504.1	1e-137	PREDICTED: squamosa promoter-binding-like protein 8
Swissprot	Q8GXL3	3e-55	SPL8_ARATH; Squamosa promoter-binding-like protein 8
TrEMBL	A0A2G3AME0	1e-161	A0A2G3AME0_CAPAN; Squamosa promoter-binding-like protein 8
TrEMBL	A0A2G3DJ70	1e-161	A0A2G3DJ70_CAPCH; Squamosa promoter-binding-like protein 10
STRING	Solyc01g090730.2.1	1e-110	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4846	23	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G02065.2	1e-51	squamosa promoter binding protein-like 8

Publications ? help Back to Top
Jorgensen SA,Preston JC Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis. Mol. Phylogenet. Evol., 2014. 73: p. 129-39 [PMID:24508602] Xing S, et al. SPL8 Acts Together with the Brassinosteroid-Signaling Component BIM1 in Controlling Arabidopsis thaliana Male Fertility. Plants (Basel), 2013. 2(3): p. 416-28 [PMID:27137384]