PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA00g32590
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family ERF
Protein Properties Length: 186aa    MW: 20519.7 Da    PI: 10.2027
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA00g32590genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.36.8e-17102151255
         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  y+GVr +  +g+Wv+eIr p++   + r++lg++  ae+Aa+a++ a+++++g
  CA00g32590 102 TYRGVRKRN-WGKWVSEIRQPRK---KSRIWLGTYPRAEMAARAHDVAALAIKG 151
                 69****887.**********843...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103222.958102159IPR001471AP2/ERF domain
SMARTSM003803.6E-34102165IPR001471AP2/ERF domain
SuperFamilySSF541712.29E-21102160IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.0E-31102160IPR001471AP2/ERF domain
PfamPF008471.1E-11102151IPR001471AP2/ERF domain
PRINTSPR003677.2E-10103114IPR001471AP2/ERF domain
CDDcd000182.55E-30103161No hitNo description
PRINTSPR003677.2E-10125141IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MEDHHHEFSI SSSTSTTSSS FTSCSNNCLS SPSTTTCCST SSTSSNCFHE SIAKSTSNCK  60
SKKSSKKVDQ DFTKNNGNCH GNEDNKKIRR KIEGGVDEKH PTYRGVRKRN WGKWVSEIRQ  120
PRKKSRIWLG TYPRAEMAAR AHDVAALAIK GNSAYLNFPH LADQLPRPAS TSXPQPLKLQ  180
PPALF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1995160773Ethylene-responsive transcription factor ERF096
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2335211e-75AC233521.1 Solanum tuberosum cultivar RH89-039-16 chromosome 1 clone RH165C24, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016557626.11e-124PREDICTED: ethylene-responsive transcription factor ERF034-like
TrEMBLA0A2G3AMC81e-134A0A2G3AMC8_CAPAN; Ethylene-responsive transcription factor TINY
STRINGPGSC0003DMT4000669771e-61(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21224225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44940.16e-44ERF family protein