PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA00g32970
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family M-type_MADS
Protein Properties Length: 238aa    MW: 26803.6 Da    PI: 10.043
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA00g32970genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF55.38.1e-181151343
                --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
      SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                i n+s r+ tf kR++g++KK +ELS+LC+++++ ii+s+ 
  CA00g32970 11 ITNDSSRKATFKKRKKGLMKKVSELSTLCGIDACAIIYSPY 51
                89*************************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006617.255149IPR002100Transcription factor, MADS-box
SMARTSM004321.1E-25160IPR002100Transcription factor, MADS-box
CDDcd002662.93E-22285No hitNo description
SuperFamilySSF554551.57E-23295IPR002100Transcription factor, MADS-box
PRINTSPR004043.6E-10323IPR002100Transcription factor, MADS-box
PfamPF003194.2E-191152IPR002100Transcription factor, MADS-box
PRINTSPR004043.6E-102338IPR002100Transcription factor, MADS-box
PRINTSPR004043.6E-103859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MTRKKVKLAY ITNDSSRKAT FKKRKKGLMK KVSELSTLCG IDACAIIYSP YDNSPEVWPN  60
IMGAQHVLSE FKRMPEMEQS KKMVNQESFM KQRIAKASEQ LKKQSKENRE KEMTEVMYQA  120
LAGKGLQNLN LGDLNDLSWV IDQNMKGIYK RIEAIKKGAS TSSSSAAAAP QVAAERKPAV  180
TGLGLEGMQR TQAEWFNDWM NNNTSEQQLG FGHGNEMIIT NFNNNHNANV WPNDFFP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKVKLAYITNDSSRKATFKKRK
22125KKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269|PubMed:16798889, ECO:0000305|PubMed:26462908}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016545891.11e-178PREDICTED: agamous-like MADS-box protein AGL80
SwissprotQ9FJK33e-65AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBLA0A1U8EHM71e-177A0A1U8EHM7_CAPAN; Agamous-like MADS-box protein AGL80
TrEMBLA0A2G3AMM41e-177A0A2G3AMM4_CAPAN; agamous-like MADS-box protein AGL80
STRINGXP_009618268.11e-133(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA15322367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.17e-58AGAMOUS-like 80
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]