PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA00g36630

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

ERF

Protein Properties

Length: 153aa MW: 17399.1 Da PI: 6.8078

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA00g36630	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	62.8	7.4e-20	30	80	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr ++ +g+++AeIrd ++ng r++lg++ taeeAa+a+++a+ +++g CA00g36630 30 RYRGVRKRP-WGKYAAEIRDINKNG--VRVWLGTYATAEEAARAYDKAAFEMRG 80 8******.******76676..***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	3.56E-30	29	89	No hit	No description
SMART	SM00380	1.4E-36	30	94	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	2.09E-23	30	90	IPR016177	DNA-binding domain
Pfam	PF00847	5.4E-14	30	80	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	1.0E-30	30	89	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	23.894	30	88	IPR001471	AP2/ERF domain
PRINTS	PR00367	4.4E-11	31	42	IPR001471	AP2/ERF domain
PRINTS	PR00367	4.4E-11	54	70	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 153 aa Download sequence Send to blast
MFKSRNIQQN NMDEDNSNIK NKESGGEEKR YRGVRKRPWG KYAAEIRDIN KNGVRVWLGT 60 YATAEEAARA YDKAAFEMRG RFAVLNFPHE HPSFSSDHSS STSSSYSMAS SSTSHSSVHN 120 AHEVKEVIEF EYFDDKLLED LLGFESDKTK FT*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	1e-32	12	137	1	114	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016567930.1	1e-101	PREDICTED: ethylene-responsive transcription factor ERF096-like
Swissprot	Q9LTC5	6e-37	ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBL	A0A1U8G9W7	2e-99	A0A1U8G9W7_CAPAN; Ethylene-responsive transcription factor
TrEMBL	A0A2G2ZXM8	2e-99	A0A2G2ZXM8_CAPAN; ethylene-responsive transcription factor ERF096-like
TrEMBL	A0A2G3CV77	2e-99	A0A2G3CV77_CAPCH; Ethylene-responsive transcription factor
STRING	XP_009621762.1	2e-48	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA21	24	1165

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G23230.1	4e-24	ERF family protein

Publications ? help Back to Top
Van den Broeck L, et al. From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress. Mol. Syst. Biol., 2017. 13(12): p. 961 [PMID:29269383]