PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA00g41130
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family M-type_MADS
Protein Properties Length: 87aa    MW: 9513.79 Da    PI: 9.4527
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA00g41130genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF405.1e-13251149
                S---SHHHHHHHHHHHHHHHHHHHHHHHH.HHT-EEEEEEE-TTSEEEEE CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSv.LCdaevaviifsstgklyey 49
                ++ien++ r vtfskR+ g+ KKA+ L     d++v +i +s++gk y +
  CA00g41130  2 EKIENETTRLVTFSKRKSGLYKKASKLVEkYDDVDVGIISYSPNGKPYSF 51
                57************************9852679*************9887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006614.675155IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.71E-16165IPR002100Transcription factor, MADS-box
SMARTSM004325.4E-7154IPR002100Transcription factor, MADS-box
PfamPF003197.3E-18351IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 87 aa     Download sequence    Send to blast
MEKIENETTR LVTFSKRKSG LYKKASKLVE KYDDVDVGII SYSPNGKPYS FFHPTFDSVV  60
GHFVSPDTQP SVDSGIVAAS ARIKVT*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016541048.11e-53PREDICTED: agamous-like MADS-box protein AGL29
TrEMBLA0A2G2YPT12e-55A0A2G2YPT1_CAPAN; Uncharacterized protein
STRINGPGSC0003DMT4000936478e-28(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38220138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.13e-16AGAMOUS-like 29