PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA00g41340
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family M-type_MADS
Protein Properties Length: 197aa    MW: 22697.1 Da    PI: 8.933
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA00g41340genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF55.86e-182069149
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-.TTSEEEEE CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifs.stgklyey 49
                k+i+n   r+vtfskRr g++KK +EL++L++a++ v++ s ++++++++
  CA00g41340 20 KPIDNRNSRHVTFSKRRLGLFKKTSELCILTGAKIVVLVQSlKRQRVFTF 69
                68*************************************99556777777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006619.2591260IPR002100Transcription factor, MADS-box
SMARTSM004327.6E-221272IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.07E-191383IPR002100Transcription factor, MADS-box
PRINTSPR004042.4E-101434IPR002100Transcription factor, MADS-box
PfamPF003191.2E-172269IPR002100Transcription factor, MADS-box
PRINTSPR004042.4E-103449IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MNVNTNTVKK TQGRRKIAIK PIDNRNSRHV TFSKRRLGLF KKTSELCILT GAKIVVLVQS  60
LKRQRVFTFG HPSADAVIDL YLTGKSSSSS LLSSLSIDEF NLQRNNHYYS EMCKDLEEEK  120
KKKKEENIEE EKLVNIDSNN SDNNVGCWWY EPIDTKGIDE LEEFMVALEK WKKNLYFLFF  180
VHEVVVCVFL GGSKCY*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016582025.11e-134PREDICTED: agamous-like MADS-box protein AGL62
TrEMBLA0A2G2Y0441e-142A0A2G2Y044_CAPAN; MADS-box transcription factor 23
STRINGSolyc01g106700.2.18e-74(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21342252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.13e-23AGAMOUS-like 62