PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA00g41390

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

Protein Properties

Length: 236aa MW: 27058.8 Da PI: 8.4026

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA00g41390	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	49.9	5.6e-16	130	219	1	98
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 f+k +++s+v+ +l lp +f+++h k + +tl de+g + e k+ k++ l++GW++F+ +++L +gD +vF+l+ ++f +v ++r CA00g41390 130 FVKPMLQSHVTGGFWLGLPVHFCKTHLPK--HDEYVTLIDENGDEAETKYLALKTG----LSGGWRGFAIDHELVDGDALVFQLIAPTRF--KVYIIR 219 89**********************433..3347***********666666....**********************987777..888877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	3.3E-20	121	220	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	2.55E-24	123	221	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	4.18E-26	128	219	No hit	No description
PROSITE profile	PS50863	11.73	130	221	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.5E-13	130	219	IPR003340	B3 DNA binding domain
SMART	SM01019	2.8E-21	130	221	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 236 aa Download sequence Send to blast
MVESKKKMLT YEESRLKRLE ENKKRMEELN LTKLAQAVRS ATSPKPSPMK KVKPRVRQEV 60 DLSSVRRSNR VADKPAPNYR EAVIEPLGRP RSYRRRDLLN RVYAADEDRQ YAIERAEQLQ 120 SEFDADFPSF VKPMLQSHVT GGFWLGLPVH FCKTHLPKHD EYVTLIDENG DEAETKYLAL 180 KTGLSGGWRG FAIDHELVDG DALVFQLIAP TRFKVYIIRV NQAEDEETEG VDNVI*

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975440	5e-75	HG975440.1 Solanum pennellii chromosome ch01, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016539590.1	1e-175	PREDICTED: B3 domain-containing protein At3g19184-like
Swissprot	Q1G3M3	5e-88	Y3918_ARATH; B3 domain-containing protein At3g19184
TrEMBL	A0A1U8E8F3	1e-173	A0A1U8E8F3_CAPAN; B3 domain-containing protein
TrEMBL	A0A2G2Y050	1e-173	A0A2G2Y050_CAPAN; B3 domain-containing protein At3g19184-like
STRING	XP_009612757.1	1e-148	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1628	23	71

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19184.1	6e-86	B3 family protein

Publications ? help Back to Top
Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]