PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA00g41400
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family B3
Protein Properties Length: 269aa    MW: 30609.8 Da    PI: 7.5277
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA00g41400genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.57.7e-1657146198
                 EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                 f k ++ps+v    +l lpk+f++ h  +   ++ ++l de+g++++  +   +++    l++GW++F  +++L  gD ++F+l++    +++v ++r
  CA00g41400  57 FAKCMLPSNVAHGFWLHLPKSFCNMHLPN--HDTSVILVDEWGNEFRTSYLLGRNG----LSAGWRGFSISHRLLKGDLLIFRLIEP--CKMKVYIVR 146
                 889********************999533..5568***************666666....9**********************9974..335777765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.7E-1949148IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.73E-2251148IPR015300DNA-binding pseudobarrel domain
CDDcd100171.74E-2255146No hitNo description
SMARTSM010196.4E-1857148IPR003340B3 DNA binding domain
PfamPF023625.6E-1357146IPR003340B3 DNA binding domain
PROSITE profilePS5086311.58957148IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MNLVKSNNPI KAERIKRKGT GKRTNINDLY DDVEAKYSVM ERAERVLSSL ADEFPSFAKC  60
MLPSNVAHGF WLHLPKSFCN MHLPNHDTSV ILVDEWGNEF RTSYLLGRNG LSAGWRGFSI  120
SHRLLKGDLL IFRLIEPCKM KVYIVRVNGR EVVDAALCLM NWDTLTKSTE FEDLVREDKR  180
KRKKAKRLAE PFLVDLSKPK ERVHNDSHSI IDLNVSPSEH QCENNSEDLG SEVLEGSDVT  240
NRLQSNEICC PETSFLHDNN PHNSVACR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1177187DKRKRKKAKRL
2178186KRKRKKAKR
3179183RKRKK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754407e-90HG975440.1 Solanum pennellii chromosome ch01, complete genome.
GenBankHG9755137e-90HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016539586.10.0PREDICTED: B3 domain-containing protein At3g19184-like
TrEMBLA0A1U8DZJ50.0A0A1U8DZJ5_CAPAN; Uncharacterized protein
TrEMBLA0A2G2Y0790.0A0A2G2Y079_CAPAN; B3 domain-containing protein At3g19184-like
STRINGXP_009612758.11e-152(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16282371
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.11e-37B3 family protein