PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA00g41410
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family B3
Protein Properties Length: 373aa    MW: 42127.5 Da    PI: 6.9044
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA00g41410genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.32.2e-1644133198
                 EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                 f+k +++s+v +  +l++pkkf+++h  +k  + t++l de+++++  ++ ++k++    l++GWk+F  a++L e+D++vF+l++  +f  +v ++r
  CA00g41410  44 FIKYMLNSHVARGFWLSFPKKFCDSHL-PK-HDDTVVLVDEKNEEFGTNFLVDKNG----LSGGWKGFSIAHNLLEKDVLVFQLIEPCKF--KVYIVR 133
                 8999**********************4.33.3459***************888888....************************998888..888777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.35E-2138134IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.2E-1838135IPR015300DNA-binding pseudobarrel domain
CDDcd100179.84E-2342133No hitNo description
PfamPF023626.1E-1444134IPR003340B3 DNA binding domain
PROSITE profilePS5086311.51944135IPR003340B3 DNA binding domain
SMARTSM010192.1E-1744135IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MLLILDFTSN GRKGQKYGSV EANSLAMLRA KEFQANLPSE FPSFIKYMLN SHVARGFWLS  60
FPKKFCDSHL PKHDDTVVLV DEKNEEFGTN FLVDKNGLSG GWKGFSIAHN LLEKDVLVFQ  120
LIEPCKFKVY IVRENYLREI DAAAAISPPE FHAGRQEEAM LLPSSEHGLA TDQCGNNSDN  180
GCEVLERIRL SKSRVEFKDI KDFSGFHIVV DGLIIDSQVP AHFRAKYYVL CRTQNSYLHD  240
HLLGDPNVKL VAGMITETVS IADGIKASSI STPSYYFEIW DRSLKAFEYL GLRVGFLRER  300
LSKLINLSCE LENILAPKKL ELAEAKEEML KLEEKVLKAK HVIKNLDSEV KALTKKDSKF  360
ELDFKAVATT PW*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016539583.10.0PREDICTED: B3 domain-containing protein Os01g0234100-like isoform X1
RefseqXP_016539584.10.0PREDICTED: B3 domain-containing protein Os01g0234100-like isoform X2
TrEMBLA0A1U8DX300.0A0A1U8DX30_CAPAN; B3 domain-containing protein Os01g0234100-like isoform X1
TrEMBLA0A1U8E6Z20.0A0A1U8E6Z2_CAPAN; B3 domain-containing protein
TrEMBLA0A2G2Y0700.0A0A2G2Y070_CAPAN; B3 domain-containing protein Os01g0234100-like isoform X2
STRINGXP_009612763.11e-179(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA30232343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.13e-39B3 family protein