PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA00g41430
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family M-type_MADS
Protein Properties Length: 382aa    MW: 42646.8 Da    PI: 8.2209
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA00g41430genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF48.41.2e-15950142
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                ++ien+++r+ ++ kR++g lKKA+EL +LC+ae +++ +s+
  CA00g41430  9 EFIENTTQRKASYKKRQKGFLKKAYELMTLCNAETSIVTYSP 50
                68**************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006617.984149IPR002100Transcription factor, MADS-box
SMARTSM004323.2E-14160IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.28E-21396IPR002100Transcription factor, MADS-box
CDDcd002662.25E-19384No hitNo description
PRINTSPR004049.8E-10323IPR002100Transcription factor, MADS-box
PfamPF003191.1E-131053IPR002100Transcription factor, MADS-box
PRINTSPR004049.8E-102338IPR002100Transcription factor, MADS-box
PRINTSPR004049.8E-103859IPR002100Transcription factor, MADS-box
Gene3DG3DSA:3.20.80.103.5E-490148IPR011256Regulatory factor, effector binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MPRKKIKFEF IENTTQRKAS YKKRQKGFLK KAYELMTLCN AETSIVTYSP YHDEPKVFPN  60
HDATINTFTK FRELSMLEKS NNMMTHEEFN KKRIKKMEKQ LYKERKKNRI IELTNKMYEM  120
LNGKGTPADM HSYDLNDLSY VINQNVKQVQ EAIKTKVDVE GSTSNAPQHI DGLTVPDRTN  180
SEWRRDLLSA PAGAPVSMAS LMTTSSKILS GTNSEGTRAP LLVPVMASVS MVPPVAPSMI  240
PSTAPSQVAQ SMSHLIATCP QIVPSEGPSW VSPSPHLPLS FSSQTHPPIP LQIDLQRPPH  300
GMAPSIPLSM MAPPMFPSIN TPQISTSMPM NNYQNSSIDF PQNPGLSPDM LDWNNDDIMT  360
LFDDSSFSII NVQEPNGDNN F*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1225RKKIKFEFIENTTQRKASYKKRQK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016582370.10.0PREDICTED: uncharacterized protein LOC107879963
TrEMBLA0A1U8HG730.0A0A1U8HG73_CAPAN; uncharacterized protein LOC107879963
STRINGPGSC0003DMT4000772581e-100(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13291040
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65300.11e-27AGAMOUS-like 38