PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA00g46850

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

bHLH

Protein Properties

Length: 350aa MW: 38335.2 Da PI: 7.3687

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA00g46850	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	12.9	0.0002	227	265	12	55
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ +++ L +l+ + +K + a++L +A+ YI+ Lq CA00g46850 227 RKEKLGDRITSLHQLVSPF-----GKTDTASVLSEAIGYIRFLQ 265 6678889999999999998.....8******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	7.36E-7	210	269	No hit	No description
PROSITE profile	PS50888	11.458	215	264	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.83E-10	225	275	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.2E-7	229	272	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 350 aa Download sequence Send to blast
MMAGNPTNWW SMIMNNGNMQ HPQLSHDDHP HISSSTTSNS SHFYGAHNPN QDFPRSLSQL 60 LVSGFSGDEE KFGISPFHEA GNSEDHSLNS VHPTSSSSVA TNFRVPVADV KPELGQLYDY 120 HRHHHHHHHV HNEFQTSSLQ EKLELATDHF TRPLASNWSQ QDLPSPASSC ITTGLSHNLL 180 NFSNSKGEHK HQHPDHNSTE CNSTSSGGIS KKARVQHSSA QPSLKVRKEK LGDRITSLHQ 240 LVSPFGKTDT ASVLSEAIGY IRFLQAQIQA LSSPYLGNAS GSMGHIPQQS VNFLDGNFLK 300 RRSAYKQDSQ HKPTDLRSRG LCLVPISCMA NVGSDTGADY WAPALGGGF*

Sequence ? help Back to Top

Protein Sequence Length: 350 aa Download sequence Send to blast

MMAGNPTNWW SMIMNNGNMQ HPQLSHDDHP HISSSTTSNS SHFYGAHNPN QDFPRSLSQL  60
LVSGFSGDEE KFGISPFHEA GNSEDHSLNS VHPTSSSSVA TNFRVPVADV KPELGQLYDY  120
HRHHHHHHHV HNEFQTSSLQ EKLELATDHF TRPLASNWSQ QDLPSPASSC ITTGLSHNLL  180
NFSNSKGEHK HQHPDHNSTE CNSTSSGGIS KKARVQHSSA QPSLKVRKEK LGDRITSLHQ  240
LVSPFGKTDT ASVLSEAIGY IRFLQAQIQA LSSPYLGNAS GSMGHIPQQS VNFLDGNFLK  300
RRSAYKQDSQ HKPTDLRSRG LCLVPISCMA NVGSDTGADY WAPALGGGF*

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975445	6e-63	HG975445.1 Solanum pennellii chromosome ch06, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016578611.1	0.0	PREDICTED: transcription factor bHLH68-like isoform X1
Swissprot	Q8S3D1	1e-52	BH068_ARATH; Transcription factor bHLH68
TrEMBL	A0A1U8H548	0.0	A0A1U8H548_CAPAN; transcription factor bHLH68-like isoform X1
STRING	PGSC0003DMT400042541	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1519	22	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29100.1	1e-54	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Le Hir R, et al. AtbHLH68 transcription factor contributes to the regulation of ABA homeostasis and drought stress tolerance in Arabidopsis thaliana. Physiol Plant, 2017. 160(3): p. 312-327 [PMID:28369972] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]