PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA00g53740

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

M-type_MADS

Protein Properties

Length: 242aa MW: 27342.1 Da PI: 8.6478

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA00g53740	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	56.2	4.4e-18	10	50	2	42
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 +i n+s r+ tf kR++g++KK +ELS+LC+++++ ii+s+ CA00g53740 10 FITNDSARKATFKKRKKGLMKKVSELSTLCGIDACAIIYSP 50 89**************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	16.904	1	49	IPR002100	Transcription factor, MADS-box
SMART	SM00432	2.8E-25	1	60	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	5.89E-24	2	95	IPR002100	Transcription factor, MADS-box
CDD	cd00266	8.01E-22	2	85	No hit	No description
PRINTS	PR00404	4.5E-8	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	4.3E-19	10	51	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.5E-8	23	38	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0043078	Cellular Component	polar nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 242 aa Download sequence Send to blast
MTRKKVKLAF ITNDSARKAT FKKRKKGLMK KVSELSTLCG IDACAIIYSP YDDSPEVWPN 60 TMGAQRVLAE FKRMPEMEQS KKMMNQESFL RQRIAKANEQ LKKQSKENRE KEMTEIMYQG 120 LTGKGLQHLN LGDLNDLGWV IDQNLKEIYK RIEAVKKGAS TSSSAAAAKS HAVVAPPVEQ 180 EPAEVELGLD GMQRTQAEWF TDWMNSNTSD QQIGFGHGDE MILPNHNDNH SANMWPNDFY 240 P*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	2	24	RKKVKLAFITNDSARKATFKKRK
2	21	25	KKRKK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269\|PubMed:16798889, ECO:0000305\|PubMed:26462908}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00553	DAP	Transfer from AT5G48670	Download

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975440	0.0	HG975440.1 Solanum pennellii chromosome ch01, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016582263.1	0.0	PREDICTED: agamous-like MADS-box protein AGL80
Swissprot	Q9FJK3	3e-66	AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBL	A0A1U8HLX7	0.0	A0A1U8HLX7_CAPAN; agamous-like MADS-box protein AGL80
STRING	Solyc01g102260.2.1	1e-142	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1532	23	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G48670.1	1e-65	AGAMOUS-like 80

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]