PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA00g56330

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

bHLH

Protein Properties

Length: 249aa MW: 28348.5 Da PI: 9.2816

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA00g56330	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.1	5.5e-12	72	124	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 rr h +Er+RR+++ ++ Lr+llP ++K s ++ +Av+YIk++q CA00g56330 72 RRIIHRDIERQRRQEMSALYSSLRSLLPLqY---IKGKRSVSDHMHEAVNYIKEMQ 124 6888***********************66...******************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	1.11E-10	70	128	No hit	No description
PROSITE profile	PS50888	13.783	71	123	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.4E-10	72	138	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	5.1E-9	72	124	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.31E-13	72	142	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	0.002	77	129	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 249 aa Download sequence Send to blast
MFSLQGCSDN DLLIQILSNP CQQSKISQDQ VMDYASLEAI HTHPPNINAQ KKRQPKRKIG 60 NDENASDDFK LRRIIHRDIE RQRRQEMSAL YSSLRSLLPL QYIKGKRSVS DHMHEAVNYI 120 KEMQANIKEL EKRKDLLVKS SPLPNSIRRE TENGSTNSFI DCTVTVSPCH CGIQISLSVD 180 CKGKCFPLSK LLRELLKQGL NVVNCVSANA NQRSLYTIQT EVRTVTHVYP NLAKTWTFNY 240 CLSSHIVF*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016564736.1	1e-163	PREDICTED: transcription factor bHLH118-like
TrEMBL	A0A2G2ZZ14	0.0	A0A2G2ZZ14_CAPAN; Uncharacterized protein
STRING	Solyc03g006910.2.1	2e-98	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA598	24	109

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G51790.1	3e-39	bHLH family protein