PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA00g57460

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

HD-ZIP

Protein Properties

Length: 188aa MW: 21480.5 Da PI: 10.117

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA00g57460	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.8	4.3e-19	64	118	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tk+q Lee F++n++++ +e+e LA++l+L +rqV vWFqNrRa+ k CA00g57460 64 RKKLRLTKQQSFLLEESFRQNHTLNPKEKEALAMQLKLRTRQVEVWFQNRRARSK 118 78889************************************************98 PP
2	HD-ZIP_I/II	111.1	7.3e-36	64	152	1	89
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 +kk+rl+k+q+ lLEesF+++++L+p++K++la +L+l++rqv+vWFqnrRAR k+kq+E+++e+Lkr++ +l+e+n+rL+keveeLr+ CA00g57460 64 RKKLRLTKQQSFLLEESFRQNHTLNPKEKEALAMQLKLRTRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNRRLKKEVEELRA 152 69*************************************************************************************94 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.7E-17	47	118	IPR009057	Homeodomain-like
SuperFamily	SSF46689	8.36E-19	47	121	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.827	60	120	IPR001356	Homeobox domain
SMART	SM00389	8.1E-17	62	124	IPR001356	Homeobox domain
CDD	cd00086	1.21E-14	63	121	No hit	No description
Pfam	PF00046	1.9E-16	64	118	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	95	118	IPR017970	Homeobox, conserved site
Pfam	PF02183	2.9E-10	120	154	IPR003106	Leucine zipper, homeobox-associated
SMART	SM00340	1.4E-18	120	163	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 188 aa Download sequence Send to blast
MPENSTCLEL TISIPGSSSN SSSFPSPGGG GYNMMRELDI NLVPSIQVSN NNNNNNNNNG 60 VPPRKKLRLT KQQSFLLEES FRQNHTLNPK EKEALAMQLK LRTRQVEVWF QNRRARSKLK 120 QTEMECEYLK RWFGSLTEQN RRLKKEVEEL RAMKVGVLSP HTCPSTLTMC PHCERVTTTT 180 IRDESRI*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	112	120	RRARSKLKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC238741	9e-33	AC238741.2 Solanum lycopersicum chromosome 05 clone C05HBa0078I05, complete sequence.
GenBank	HG975444	9e-33	HG975444.1 Solanum pennellii chromosome ch05, complete genome.
GenBank	HG975517	9e-33	HG975517.1 Solanum lycopersicum chromosome ch05, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016546780.1	1e-106	PREDICTED: homeobox-leucine zipper protein ATHB-17
Swissprot	Q8S9N6	2e-72	ATB17_ARATH; Homeobox-leucine zipper protein ATHB-17
TrEMBL	A0A2G2YBT4	1e-135	A0A2G2YBT4_CAPAN; Homeobox-leucine zipper protein HOX3
STRING	XP_009802790.1	1e-84	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA290	24	186

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01430.1	9e-64	homeobox-leucine zipper protein 17

Publications ? help Back to Top
Zhao P, et al. ATHB17 enhances stress tolerance by coordinating photosynthesis associated nuclear gene and ATSIG5 expression in response to abiotic stress. Sci Rep, 2017. 7: p. 45492 [PMID:28358040]