PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA00g60400
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family M-type_MADS
Protein Properties Length: 106aa    MW: 11861.1 Da    PI: 9.9711
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA00g60400genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF22.41.6e-072341345
                HHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
      SRF-TF 13 fskRrngilKKAeELSvLCdaevaviifsstgk 45
                fsk ++ + K A  LS+ C++e a++ifs  g+
  CA00g60400  2 FSKKQKALCKQATNLSIPCGIEFAILIFSIMGE 34
                9****************************8876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006610.624142IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.03E-10260IPR002100Transcription factor, MADS-box
PfamPF003191.5E-6237IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 106 aa     Download sequence    Send to blast
MFSKKQKALC KQATNLSIPC GIEFAILIFS IMGEPFIFGK PNAESIVDRF LQAKQATECS  60
SSCRTIVEKF CDHKRPAKID QKKKMIIDDK GKSKAIEGKK QEMLF*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016571385.12e-44PREDICTED: agamous-like MADS-box protein AGL29
TrEMBLA0A2G2XXN14e-69A0A2G2XXN1_CAPAN; Uncharacterized protein
STRINGXP_009802970.16e-17(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22971258
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.15e-12AGAMOUS-like 29