PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA00g62090
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family C3H
Protein Properties Length: 152aa    MW: 16926.8 Da    PI: 8.2088
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA00g62090genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH30.75.5e-105880527
                --SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH  5 lCrffartGtCkyGdrCkFaHgp 27
                 C++f rtG+C+yGd+Ck+ H++
  CA00g62090 58 VCHHFVRTGYCQYGDSCKYYHPK 80
                6********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004514.2E-4338IPR003604Zinc finger, U1-type
SuperFamilySSF576677.06E-15453No hitNo description
PfamPF062202.9E-9538IPR013085Zinc finger, U1-C type
PROSITE profilePS5010315.465381IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-45380IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-75681IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.7E-65880IPR000571Zinc finger, CCCH-type
PfamPF006427.1E-85880IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 152 aa     Download sequence    Send to blast
MPLGKYYCDY CDKEFQDTAA ARRRHLEGVQ HKRAKALWYD SLRNPQLFND PDSFGKGVCH  60
HFVRTGYCQY GDSCKYYHPK QNSQTVNQTG IPPGENSREG FHSSSQPPFG SASFPGDIFR  120
EKAGASLGNL PPSLRPPPEG GYPPLPFVDW G*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2389108e-39AC238910.2 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-131o24 map 1, complete sequence.
GenBankAC2389488e-39AC238948.6 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-1h15 map 1, complete sequence.
GenBankHG9754408e-39HG975440.1 Solanum pennellii chromosome ch01, complete genome.
GenBankHG9755138e-39HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016573501.11e-110PREDICTED: zinc finger CCCH domain-containing protein 3
RefseqXP_016573502.11e-110PREDICTED: zinc finger CCCH domain-containing protein 3
SwissprotQ0JP117e-50C3H3_ORYSJ; Zinc finger CCCH domain-containing protein 3
TrEMBLA0A1U8GQH01e-109A0A1U8GQH0_CAPAN; zinc finger CCCH domain-containing protein 3
STRINGSolyc01g100990.2.11e-102(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA120081821
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26749.13e-30C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]