PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA00g63480
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family M-type_MADS
Protein Properties Length: 161aa    MW: 19008.4 Da    PI: 10.4183
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA00g63480genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF25.32e-0821591350
                HHHHHHHHHHHHHHHHHHHT-EEEEEEE-T.TSEEEEEE CS
      SRF-TF 13 fskRrngilKKAeELSvLCdaevaviifss.tgklyeys 50
                + kR + + KKA+ LS+ Cd+e+ +i fs+ +++++ ++
  CA00g63480 21 LEKRFKSLCKKAKQLSIRCDIEAGIIAFSHvENNIFAWP 59
                679**************************8345566665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006610.204149IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.22E-10790IPR002100Transcription factor, MADS-box
PfamPF003191.6E-71858IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    Send to blast
MTKKGVRTTR NLDSKIKKAI LEKRFKSLCK KAKQLSIRCD IEAGIIAFSH VENNIFAWPS  60
VIKTKDRVEN YFACIELKKL VKFQKHQTFL QSIVDTQEKY IDQMKQKVEK MEMDNLCNEL  120
VNTRKRFDEL EDREIKGLLK LFAVKRTKLE ERKQQLNQNI *
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016574388.14e-84PREDICTED: agamous-like MADS-box protein AGL8 homolog
TrEMBLA0A2G2ZJT51e-111A0A2G2ZJT5_CAPAN; Uncharacterized protein
STRINGPGSC0003DMT4000141051e-51(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37820129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06500.11e-16AGAMOUS-like 96