PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA00g64330

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

MYB_related

Protein Properties

Length: 88aa MW: 9622.65 Da PI: 9.927

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA00g64330	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	26.9	1.1e-08	13	59	3	46
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46 +WT+ + + +a + + ++ +W+ +a+ +g ++t++++k ++ CA00g64330 13 SWTAKQNKAFERALAVYDKDtpdRWSNVAKAVGGNKTAEDVKRHYEV 59 7*******************************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	9.5E-8	10	63	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	3.5E-4	11	61	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.65E-12	12	69	IPR009057	Homeodomain-like
PROSITE profile	PS50090	6.33	12	61	IPR017877	Myb-like domain
Pfam	PF00249	1.6E-6	13	58	IPR001005	SANT/Myb domain
CDD	cd00167	9.39E-6	14	61	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 88 aa Download sequence Send to blast
MSSSQASQGS ASSWTAKQNK AFERALAVYD KDTPDRWSNV AKAVGGNKTA EDVKRHYEVL 60 IHDIMFIESG GVPFPNYKTT RGRTNTN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2cjj_A	3e-36	6	87	3	83	RADIALIS
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the dorsovental asymmetry of flowers. Promotes dorsal identity. {ECO:0000269\|PubMed:15790677}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by both CYC and DICH. {ECO:0000269\|PubMed:15790677, ECO:0000269\|PubMed:16236768}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016582406.1	4e-60	PREDICTED: protein RADIALIS-like 1
Swissprot	Q58FS3	4e-36	RAD_ANTMA; Transcription factor RADIALIS
TrEMBL	A0A1U8HG92	9e-59	A0A1U8HG92_CAPAN; Protein RADIALIS-like 1
TrEMBL	A0A2G2WA54	9e-59	A0A2G2WA54_CAPBA; Protein RADIALIS-like 1
TrEMBL	A0A2G2XX97	9e-59	A0A2G2XX97_CAPAN; protein RADIALIS-like 1
TrEMBL	A0A2G3BW03	9e-59	A0A2G3BW03_CAPCH; Uncharacterized protein
STRING	PGSC0003DMT400001883	3e-40	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA202	24	231

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G39250.1	4e-35	RAD-like 1

Publications ? help Back to Top
Corley SB,Carpenter R,Copsey L,Coen E Floral asymmetry involves an interplay between TCP and MYB transcription factors in Antirrhinum. Proc. Natl. Acad. Sci. U.S.A., 2005. 102(14): p. 5068-73 [PMID:15790677] Costa MM,Fox S,Hanna AI,Baxter C,Coen E Evolution of regulatory interactions controlling floral asymmetry. Development, 2005. 132(22): p. 5093-101 [PMID:16236768] Stevenson CE, et al. Crystallization and preliminary X-ray analysis of the RAD protein from Antirrhinum majus. Acta Crystallogr. Sect. F Struct. Biol. Cryst. Commun., 2005. 61(Pt 10): p. 885-8 [PMID:16511186] Stevenson CE, et al. Crystal structure of the MYB domain of the RAD transcription factor from Antirrhinum majus. Proteins, 2006. 65(4): p. 1041-5 [PMID:17044043]