PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA00g67460
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family M-type_MADS
Protein Properties Length: 205aa    MW: 22879.6 Da    PI: 10.9807
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA00g67460genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF62.25.8e-201762449
                -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
      SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                +n+sn qv fskRr+g++KK +EL++LC+ae+a+++fs+  k+y +
  CA00g67460 17 KNESNLQVMFSKRRAGVFKKTSELCTLCGAEIAIVVFSPGKKVYSF 62
                89******************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.3E-25665IPR002100Transcription factor, MADS-box
PROSITE profilePS5006622.133666IPR002100Transcription factor, MADS-box
SuperFamilySSF554559.03E-23780IPR002100Transcription factor, MADS-box
PRINTSPR004046.1E-16828IPR002100Transcription factor, MADS-box
PfamPF003198.4E-221562IPR002100Transcription factor, MADS-box
PRINTSPR004046.1E-162843IPR002100Transcription factor, MADS-box
PRINTSPR004046.1E-164364IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MARRRKGRQR VDIVKMKNES NLQVMFSKRR AGVFKKTSEL CTLCGAEIAI VVFSPGKKVY  60
SFGHPSVELL VDRFLGRSLP PPNNDGRHNH LLINHRNVVL RELNKEVMNM EEILQMEKAR  120
GESILEIRRR VNGGWLEAPI NALNLSQLQQ LMEAMGFLKQ EQQMLTNVGL PFLTFGSALT  180
PNTNGAMASS SHGLNIGTPF ANRA*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016579095.11e-148PREDICTED: agamous-like MADS-box protein AGL62
TrEMBLA0A1U8H6X21e-147A0A1U8H6X2_CAPAN; agamous-like MADS-box protein AGL62
STRINGSolyc01g106730.1.19e-92(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20424223
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.12e-49AGAMOUS-like 62