PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA00g69310

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

C2H2

Protein Properties

Length: 207aa MW: 23557.3 Da PI: 8.5248

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA00g69310	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.5	0.00021	63	85	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C++ F ++ L H++ H CA00g69310 63 FSCNYCHRNFYSSQALGGHQNAH 85 89******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	2.7E-6	60	90	No hit	No description
PROSITE profile	PS50157	11.198	63	90	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	65	85	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 207 aa Download sequence Send to blast
MNMNSQNQSG QQQNDEHENN GLILDLTLLC NWDSKPSDDH TFHTISSSDD SQGNNDEKEH 60 QVFSCNYCHR NFYSSQALGG HQNAHKRERI TIAKRKQNMA SMPIMHGSFH RSLGIQAHST 120 IQKPVMSFNT FRAPAFPLLY NTHSAGWWSR RRMDQLPAIG RLIMPESHGT GRLNFGNMNK 180 FPVVIDSHLM TNHQEDSKKL DLSLKL*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016576997.1	1e-155	PREDICTED: zinc finger protein 3-like
TrEMBL	A0A1U8H0L0	1e-154	A0A1U8H0L0_CAPAN; Uncharacterized protein
TrEMBL	A0A2G2ZC62	1e-154	A0A2G2ZC62_CAPAN; zinc finger protein 3-like
STRING	PGSC0003DMT400073330	8e-82	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA15930	6	6

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G10970.1	2e-25	C2H2 family protein