PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA00g70490
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family DBB
Protein Properties Length: 186aa    MW: 20445.3 Da    PI: 7.4592
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA00g70490genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box23.51.2e-07433534
    zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeH 34
                 C+ +e+  ++lfC  ++  lC+ C ++ H
  CA00g70490  4 LCDVCESAAAILFCAADEAALCRACDEKVH 33
                7**************************998 PP
2zf-B_box279.5e-095292238
    zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg....Ht 38
                + + C+ +e+ ++ ++Ce +++ lC +C +  H g    H+
  CA00g70490 52 DVPHCDICENSPAFFYCEVDGSSLCLQCDMMVHVGgkrtHS 92
                5689**************************99966566675 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003361.5E-8147IPR000315B-box-type zinc finger
PROSITE profilePS5011910.153147IPR000315B-box-type zinc finger
CDDcd000211.46E-6345No hitNo description
PfamPF006433.8E-6342IPR000315B-box-type zinc finger
SMARTSM003364.3E-105196IPR000315B-box-type zinc finger
PROSITE profilePS501199.2575196IPR000315B-box-type zinc finger
PfamPF006435.9E-75291IPR000315B-box-type zinc finger
CDDcd000216.47E-75493No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0010100Biological Processnegative regulation of photomorphogenesis
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MRTLCDVCES AAAILFCAAD EAALCRACDE KVHMCNKLAS RHVRVGLAKP NDVPHCDICE  60
NSPAFFYCEV DGSSLCLQCD MMVHVGGKRT HSRYLLLRQK VEFPGDKAGP TEELARKTLD  120
PGENKREYSH SPKPMVENNH QNQRVSPVLV SDGSADGHGK KDKMIDLNVK PSRFHGHASN  180
QVSQL*
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of seedling photomorphogenesis. {ECO:0000269|PubMed:18540109}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754414e-75HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016560543.11e-134PREDICTED: B-box zinc finger protein 19-like isoform X1
SwissprotC0SVM52e-73BBX19_ARATH; B-box zinc finger protein 19
TrEMBLA0A2G2XG891e-135A0A2G2XG89_CAPBA; B-box zinc finger protein 19
STRINGPGSC0003DMT4000093281e-122(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31752340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38960.16e-76DBB family protein