PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA00g71020

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

MYB

Protein Properties

Length: 255aa MW: 29118.1 Da PI: 9.3298

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA00g71020	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.1	1.7e-17	16	63	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT++Ede+l+++ + G ++W+++++ g++R++k+c++rw++yl CA00g71020 16 KGPWTKDEDEKLIEYTYKNGHNNWRLVPKNAGLKRCGKSCRLRWNNYL 63 79*********************************************7 PP
2	Myb_DNA-binding	50.7	4.3e-16	69	114	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg +T+eE++++++++ +G++ W++Ia +++ Rt++++k+++++yl CA00g71020 69 RGGFTKEEEQIIINLHSSFGNK-WSRIATHLP-ERTDNEIKNFYNTYL 114 788*****************.*****.***********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	25.973	11	67	IPR017930	Myb domain
SuperFamily	SSF46689	3.88E-29	13	110	IPR009057	Homeodomain-like
SMART	SM00717	4.2E-15	15	65	IPR001005	SANT/Myb domain
Pfam	PF00249	6.6E-16	16	63	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.5E-23	17	71	IPR009057	Homeodomain-like
CDD	cd00167	3.74E-12	18	63	No hit	No description
PROSITE profile	PS51294	18.807	68	118	IPR017930	Myb domain
SMART	SM00717	7.7E-15	68	116	IPR001005	SANT/Myb domain
Pfam	PF00249	9.0E-15	69	114	IPR001005	SANT/Myb domain
CDD	cd00167	7.23E-12	72	114	No hit	No description
Gene3D	G3DSA:1.10.10.60	3.7E-24	72	118	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 255 aa Download sequence Send to blast
MGRYPCCNYD DSDLKKGPWT KDEDEKLIEY TYKNGHNNWR LVPKNAGLKR CGKSCRLRWN 60 NYLKPGIKRG GFTKEEEQII INLHSSFGNK WSRIATHLPE RTDNEIKNFY NTYLGKKLLK 120 LGIDPKTHKP ISHINSLIFT PTLRLQAQVT LQAKIQQFLQ SRPNSSLNTN LFSSIQENFL 180 SNPIQGAIYQ FLNCLQPNFT ITTPCLDNTT NSLPNGYSSI SNSVEVPSEK INKIETIQKI 240 STLSLCEEDT QTEK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	1e-28	13	118	4	108	B-MYB
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269\|PubMed:24902892}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269\|PubMed:24902892}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019240410.1	1e-103	PREDICTED: transcription factor MYB34-like
Swissprot	Q9S9Z2	7e-61	MYB93_ARATH; Transcription factor MYB93
TrEMBL	A0A2G2XWU0	0.0	A0A2G2XWU0_CAPAN; Transcription factor MYB28
STRING	XP_009789695.1	1e-101	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12	24	2154

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G16770.2	8e-67	myb domain protein 9

Publications ? help Back to Top
Gibbs DJ,Coates JC AtMYB93 is an endodermis-specific transcriptional regulator of lateral root development in arabidopsis. Plant Signal Behav, 2014. 9(10): p. e970406 [PMID:25482809]