PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA00g74560
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family M-type_MADS
Protein Properties Length: 63aa    MW: 7140.3 Da    PI: 11.0568
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA00g74560genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF98.33.2e-311059251
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                rienk+nrqvtfskRr g+lKKA+E+SvLCdaev +i+fss+gkl+eys+
  CA00g74560 10 RIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVGLIVFSSKGKLFEYST 59
                8***********************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006632.226161IPR002100Transcription factor, MADS-box
SMARTSM004326.9E-40160IPR002100Transcription factor, MADS-box
CDDcd002655.54E-36261No hitNo description
SuperFamilySSF554552.35E-29261IPR002100Transcription factor, MADS-box
PRINTSPR004045.7E-32323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.3E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004045.7E-322338IPR002100Transcription factor, MADS-box
PRINTSPR004045.7E-323859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 63 aa     Download sequence    Send to blast
MGRGRVQLRR IENKINRQVT FSKRRSGLLK KAHEISVLCD AEVGLIVFSS KGKLFEYSTD  60
SW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A2e-21160161MEF2C
5f28_B2e-21160161MEF2C
5f28_C2e-21160161MEF2C
5f28_D2e-21160161MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF1301187e-99AF130118.2 Capsicum annuum MADS box protein (MADS6) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001311552.15e-36agamous-like MADS-box protein AGL8 homolog
RefseqXP_027773500.12e-36agamous-like MADS-box protein AGL8 homolog isoform X3
SwissprotO223289e-36AGL8_SOLCO; Agamous-like MADS-box protein AGL8 homolog
TrEMBLA0A067FQH19e-36A0A067FQH1_CITSI; Uncharacterized protein
STRINGXP_004172815.11e-36(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4024625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60910.19e-38AGAMOUS-like 8