PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA00g75110

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

MYB_related

Protein Properties

Length: 1098aa MW: 121344 Da PI: 4.4925

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA00g75110	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	33.2	1.2e-10	2	44	3	48
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 WT eEde+l+++ k+l++ W+tIa +g Rt+ qc +r+ k+l CA00g75110 2 EWTREEDEKLLHLAKLLPTQ-WRTIAPIVG--RTPSQCLERYEKLL 44 6***************99.****8..********9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	19.845	1	48	IPR017930	Myb domain
CDD	cd11659	2.07E-27	1	47	No hit	No description
SMART	SM00717	1.9E-8	1	46	IPR001005	SANT/Myb domain
Pfam	PF00249	7.4E-9	2	44	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.7E-10	2	45	IPR009057	Homeodomain-like
SuperFamily	SSF46689	8.22E-11	2	50	IPR009057	Homeodomain-like
Pfam	PF11831	1.7E-55	347	587	IPR021786	Pre-mRNA splicing factor component Cdc5p/Cef1

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009870	Biological Process	defense response signaling pathway, resistance gene-dependent
GO:0010204	Biological Process	defense response signaling pathway, resistance gene-independent
GO:0042742	Biological Process	defense response to bacterium
GO:0050832	Biological Process	defense response to fungus
GO:0009507	Cellular Component	chloroplast
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1098 aa Download sequence Send to blast
TEWTREEDEK LLHLAKLLPT QWRTIAPIVG RTPSQCLERY EKLLDAACTK DENYDPNDDP 60 RKLKPGEIDP NPESKPARPD PVDMDEDEKE MLSEARARLA NTRGKKAKRK AREKQLEEAR 120 RLASLQKRRE LKAAGIDVRQ RKRKRRGIDY NAEIPFEKKP PPGFYDVTEE DRPVDQPKFP 180 TTIEELEGER RVDKEARLRK QDIARNKIAE RQDAPTSILH ANKLNDPEAV RRRSKLNLPA 240 PQIPDHELEA IAKIGIASDL IGGDELSEGN SATRALLANY AQTPQHAMTP MRTPQRTPST 300 KQDAIMMEAE NQRRLTQSQT PLLGGDNPLL HPSDFSGVTP KKREVQTPNP LLTPSATPGA 360 TGLTPRIGMT PSRDSYGMTP KGTPRDELRI NEEMDNNAKF GQFNSKKELL SGLRGLPQPK 420 NEYQIVVQQP PEENEEPEEK IEEDMSDRIA REKAEEEARQ QALLRKRSKV LQRELPRPPI 480 ASLDLIRRSL MRSDEEDKSS FVPFTLIEQA DEMIRKELVS LLEHDNTKYP LDEKAEKEKK 540 KGVKRKAVAE PAIEDFEEDE LKEADELIKD EAQFLRVAMG HENESLDDFV QAHETTLNDI 600 MYFPTRNAYG LSSVAGNMEK LAALQNEFEN VKKKMDDDTK KATKLEQKIK VLTNGYQQMR 660 AGKLWSEIES TFKKMDTAGT ELECFRALQK QEQLAATHRI NNMWEEVQKQ KEFERTLQKR 720 YGDLVAEKQK IQQLMDGHRI QAQIQEEIAA KNLALELAKA EMAEKDRALE LAKAEMAEKE 780 SALELAKAEL AEKESVPSAG DVEPSGTGQC SNTEEISASA SHVPIEADVH VEPSGTGQYS 840 NPEENHASAS DVQSAPIEAD YVPVEPSGTS NAEENSASIE DDYVLVEPSA TSNAVENSAS 900 IEADDVHVEP SGYGQCPIAE ETSASVSHDV APLDVEGQVK TGCVSAMDVE ATSDHVPMEG 960 QQNLVEESNM DVTKTEDSGA VAGDADVPKT EDSGLVAGDT DVFKTEDSGV AAGDADVPKT 1020 EDSGAVAGDA DVPKTEDSGL VAGDTDVFKT EDSGVAAGDA DVPKIEDSRV VAGDADVPKT 1080 EDSGVVTCDE EANAGKL*

Sequence ? help Back to Top

Protein Sequence Length: 1098 aa Download sequence Send to blast

TEWTREEDEK LLHLAKLLPT QWRTIAPIVG RTPSQCLERY EKLLDAACTK DENYDPNDDP  60
RKLKPGEIDP NPESKPARPD PVDMDEDEKE MLSEARARLA NTRGKKAKRK AREKQLEEAR  120
RLASLQKRRE LKAAGIDVRQ RKRKRRGIDY NAEIPFEKKP PPGFYDVTEE DRPVDQPKFP  180
TTIEELEGER RVDKEARLRK QDIARNKIAE RQDAPTSILH ANKLNDPEAV RRRSKLNLPA  240
PQIPDHELEA IAKIGIASDL IGGDELSEGN SATRALLANY AQTPQHAMTP MRTPQRTPST  300
KQDAIMMEAE NQRRLTQSQT PLLGGDNPLL HPSDFSGVTP KKREVQTPNP LLTPSATPGA  360
TGLTPRIGMT PSRDSYGMTP KGTPRDELRI NEEMDNNAKF GQFNSKKELL SGLRGLPQPK  420
NEYQIVVQQP PEENEEPEEK IEEDMSDRIA REKAEEEARQ QALLRKRSKV LQRELPRPPI  480
ASLDLIRRSL MRSDEEDKSS FVPFTLIEQA DEMIRKELVS LLEHDNTKYP LDEKAEKEKK  540
KGVKRKAVAE PAIEDFEEDE LKEADELIKD EAQFLRVAMG HENESLDDFV QAHETTLNDI  600
MYFPTRNAYG LSSVAGNMEK LAALQNEFEN VKKKMDDDTK KATKLEQKIK VLTNGYQQMR  660
AGKLWSEIES TFKKMDTAGT ELECFRALQK QEQLAATHRI NNMWEEVQKQ KEFERTLQKR  720
YGDLVAEKQK IQQLMDGHRI QAQIQEEIAA KNLALELAKA EMAEKDRALE LAKAEMAEKE  780
SALELAKAEL AEKESVPSAG DVEPSGTGQC SNTEEISASA SHVPIEADVH VEPSGTGQYS  840
NPEENHASAS DVQSAPIEAD YVPVEPSGTS NAEENSASIE DDYVLVEPSA TSNAVENSAS  900
IEADDVHVEP SGYGQCPIAE ETSASVSHDV APLDVEGQVK TGCVSAMDVE ATSDHVPMEG  960
QQNLVEESNM DVTKTEDSGA VAGDADVPKT EDSGLVAGDT DVFKTEDSGV AAGDADVPKT  1020
EDSGAVAGDA DVPKTEDSGL VAGDTDVFKT EDSGVAAGDA DVPKIEDSRV VAGDADVPKT  1080
EDSGVVTCDE EANAGKL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5mqf_L	1e-172	1	732	61	799	Cell division cycle 5-like protein
5xjc_L	1e-172	1	732	61	799	Cell division cycle 5-like protein
5yzg_L	1e-172	1	732	61	799	Cell division cycle 5-like protein
5z56_L	1e-172	1	732	61	799	Cell division cycle 5-like protein
5z57_L	1e-172	1	732	61	799	Cell division cycle 5-like protein
5z58_L	1e-172	1	732	61	799	Cell division cycle 5-like protein
6ff4_L	1e-172	1	732	61	799	Cell division cycle 5-like protein
6ff7_L	1e-172	1	732	61	799	Cell division cycle 5-like protein
6icz_L	1e-172	1	732	61	799	Cell division cycle 5-like protein
6id0_L	1e-172	1	732	61	799	Cell division cycle 5-like protein
6id1_L	1e-172	1	732	61	799	Cell division cycle 5-like protein
6qdv_O	1e-172	1	732	61	799	Cell division cycle 5-like protein
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	126	145	KRRELKAAGIDVRQRKRKRR
2	139	145	QRKRKRR
3	140	145	RKRKRR

Functional Description ? help Back to Top
Source	Description
UniProt	Component of the MAC complex that probably regulates defense responses through transcriptional control and thereby is essential for plant innate immunity. Possesses a sequence specific DNA sequence 'CTCAGCG' binding activity. Involved in mRNA splicing and cell cycle control. May also play a role in the response to DNA damage. {ECO:0000250\|UniProtKB:Q99459, ECO:0000269\|PubMed:17298883, ECO:0000269\|PubMed:17575050, ECO:0000269\|PubMed:8917598}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU095496	0.0	EU095496.1 Solanum lycopersicum CDC5-like protein (cdc5) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016572257.1	0.0	PREDICTED: cell division cycle 5-like protein isoform X1
Swissprot	P92948	0.0	CDC5L_ARATH; Cell division cycle 5-like protein
TrEMBL	A0A2G2ZG00	0.0	A0A2G2ZG00_CAPAN; Cell division cycle 5-like protein
STRING	Solyc04g009950.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6139	24	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09770.1	0.0	cell division cycle 5

Publications ? help Back to Top
Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469] Li S, et al. MAC3A and MAC3B, Two Core Subunits of the MOS4-Associated Complex, Positively Influence miRNA Biogenesis. Plant Cell, 2018. 30(2): p. 481-494 [PMID:29437988]