PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA00g75310

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

LBD

Protein Properties

Length: 172aa MW: 19372.6 Da PI: 6.8959

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA00g75310	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	135.9	1.5e-42	12	110	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaCk+lrrkC ++Cv+apyfp e+p kf vhk+FGasnv+kll+++++++reda++sl+yeAear++dPvyG+vg i+ lq+q+ +l++el+++++ CA00g75310 12 PCAACKFLRRKCLPSCVFAPYFPPEEPIKFTTVHKVFGASNVSKLLNEIQPHQREDAVNSLAYEAEARLKDPVYGCVGAISVLQRQVIRLQKELDATNA 110 7*********************************************************************************************99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.918	11	112	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.1E-42	12	109	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 172 aa Download sequence Send to blast
MSSTSSYYST PPCAACKFLR RKCLPSCVFA PYFPPEEPIK FTTVHKVFGA SNVSKLLNEI 60 QPHQREDAVN SLAYEAEARL KDPVYGCVGA ISVLQRQVIR LQKELDATNA DLMRYTNYEQ 120 ANNNQIMENH QERSNFQYGR RMVPSYYSSA RNNDISGDHN NISTDNCDGD S*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	3e-63	12	119	11	118	LOB family transfactor Ramosa2.1
5ly0_B	3e-63	12	119	11	118	LOB family transfactor Ramosa2.1
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016559091.1	1e-127	PREDICTED: LOB domain-containing protein 25
Swissprot	Q8L8Q3	2e-64	LBD25_ARATH; LOB domain-containing protein 25
TrEMBL	A0A1U8FIM5	1e-126	A0A1U8FIM5_CAPAN; LOB domain-containing protein 6
TrEMBL	A0A2G2V8W8	1e-126	A0A2G2V8W8_CAPBA; LOB domain-containing protein 6
TrEMBL	A0A2G2XWF2	1e-126	A0A2G2XWF2_CAPAN; LOB domain-containing protein 25
STRING	PGSC0003DMT400017805	1e-101	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27650.1	2e-64	LOB domain-containing protein 25

Publications ? help Back to Top
Kim M,Kim MJ,Pandey S,Kim J Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development. Plant Cell Physiol., 2016. 57(11): p. 2291-2299 [PMID:27519310]