PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA00g78240
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family M-type_MADS
Protein Properties Length: 64aa    MW: 7173.34 Da    PI: 10.6176
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA00g78240genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF84.75.5e-27959151
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                k+ien s r vtfskRr g++KKAeELS+LCdae+ vi+fs t+kly ++s
  CA00g78240  9 KKIENISSRRVTFSKRRSGLFKKAEELSILCDAEIGVIVFSDTDKLYKFAS 59
                78***********************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554559.94E-28161IPR002100Transcription factor, MADS-box
PROSITE profilePS5006630.361161IPR002100Transcription factor, MADS-box
SMARTSM004327.8E-37160IPR002100Transcription factor, MADS-box
PRINTSPR004045.1E-27323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003192.8E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004045.1E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004045.1E-273859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 64 aa     Download sequence    Send to blast
MGRGKIEMKK IENISSRRVT FSKRRSGLFK KAEELSILCD AEIGVIVFSD TDKLYKFASS  60
NSR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A6e-18161161MEF2C
5f28_B6e-18161161MEF2C
5f28_C6e-18161161MEF2C
5f28_D6e-18161161MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754497e-62HG975449.1 Solanum pennellii chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016543736.14e-36PREDICTED: agamous-like MADS-box protein AGL18
SwissprotQ6VAM47e-28MAD23_ORYSJ; MADS-box transcription factor 23
TrEMBLA0A1U8EBE48e-35A0A1U8EBE4_CAPAN; agamous-like MADS-box protein AGL18
TrEMBLA0A2G2YNT47e-35A0A2G2YNT4_CAPAN; Uncharacterized protein
TrEMBLA0A2G3BHA18e-35A0A2G3BHA1_CAPCH; Uncharacterized protein
STRINGSolyc10g080030.1.15e-32(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4024625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51860.21e-27MIKC_MADS family protein
Publications ? help Back to Top
  1. Puig J, et al.
    Analysis of the expression of the AGL17-like clade of MADS-box transcription factors in rice.
    Gene Expr. Patterns, 2013 Jun-Jul. 13(5-6): p. 160-70
    [PMID:23466806]
  2. Yu C, et al.
    The effects of fluctuations in the nutrient supply on the expression of five members of the AGL17 clade of MADS-box genes in rice.
    PLoS ONE, 2014. 9(8): p. e105597
    [PMID:25140876]
  3. Wang H, et al.
    A Signaling Cascade from miR444 to RDR1 in Rice Antiviral RNA Silencing Pathway.
    Plant Physiol., 2016. 170(4): p. 2365-77
    [PMID:26858364]