PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA00g80260

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

Trihelix

Protein Properties

Length: 391aa MW: 45021.5 Da PI: 6.1211

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA00g80260	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	67.4	2.8e-21	82	170	1	86
trihelix 1 rWtkqevlaLiearremeerlr.rg.klkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt.sessstcpyfdqle 86 +Wt+++v++Li+a +++ e+ rg kk++W+++s +m+erg ++sp+qC++k+++lnk+++++++ +++t ++++++ ++++ ++ CA00g80260 82 KWTDDMVKLLITALSYIVEDPLcRGvFVKKGKWRAISCVMAERGHHVSPQQCEDKFNDLNKKFRRLNQVLGRGTaCDVVENPVLLEMMD 170 7************9877766243259*******************************************5488898888888775 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	8.4E-20	80	195	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 391 aa Download sequence Send to blast
MQVNHQLAGH PNQAPVVLMQ HAPQVMSLGI SNMEHIAQEM QLLDTFRFHR VEMPEAYHEG 60 LNDVREVSGH TEEKQPVYQR MKWTDDMVKL LITALSYIVE DPLCRGVFVK KGKWRAISCV 120 MAERGHHVSP QQCEDKFNDL NKKFRRLNQV LGRGTACDVV ENPVLLEMMD LSYELKEEVN 180 KILGSRQLFY EEMCSFNNRN RLFLPHDQEV QQSVYLAVRG NYKYELGSMS QDLPLKRKIR 240 GEERVSNMAC ASLDCTTMVD PCLVQDMPAK RKVGGEGRHL NMSHLSLNDA TASNPDPNVL 300 HPNSNGIHFS MNNEEKEVQD EHILPCLQKL EEQKRQIQAQ ILQLERQRFK FMSCCSDEDR 360 ELQEMMLDNE VIKLENEQLM LELKRGGASV *

Sequence ? help Back to Top

Protein Sequence Length: 391 aa Download sequence Send to blast

MQVNHQLAGH PNQAPVVLMQ HAPQVMSLGI SNMEHIAQEM QLLDTFRFHR VEMPEAYHEG  60
LNDVREVSGH TEEKQPVYQR MKWTDDMVKL LITALSYIVE DPLCRGVFVK KGKWRAISCV  120
MAERGHHVSP QQCEDKFNDL NKKFRRLNQV LGRGTACDVV ENPVLLEMMD LSYELKEEVN  180
KILGSRQLFY EEMCSFNNRN RLFLPHDQEV QQSVYLAVRG NYKYELGSMS QDLPLKRKIR  240
GEERVSNMAC ASLDCTTMVD PCLVQDMPAK RKVGGEGRHL NMSHLSLNDA TASNPDPNVL  300
HPNSNGIHFS MNNEEKEVQD EHILPCLQKL EEQKRQIQAQ ILQLERQRFK FMSCCSDEDR  360
ELQEMMLDNE VIKLENEQLM LELKRGGASV *

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975440	0.0	HG975440.1 Solanum pennellii chromosome ch01, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016539171.1	0.0	PREDICTED: uncharacterized protein LOC107840004 isoform X1
Refseq	XP_016539172.1	0.0	PREDICTED: uncharacterized protein LOC107840004 isoform X2
TrEMBL	A0A2G2XVQ9	0.0	A0A2G2XVQ9_CAPAN; Uncharacterized protein
STRING	PGSC0003DMT400076504	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12585	16	20

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21200.1	9e-63	sequence-specific DNA binding transcription factors