PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA00g81170

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

Trihelix

Protein Properties

Length: 227aa MW: 25278.1 Da PI: 4.903

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA00g81170	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	47.1	6.2e-15	13	67	26	80
trihelix 26 lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcp 80 + +p+W++vs+++r++ r+p+qC++ w+n+ ++kkik++e++ s+s + CA00g81170 13 KPEPKWDSVSSYCRQHRADRGPVQCRKCWSNMISDFKKIKTWESQADGSSESYWI 67 6699****************************************98655555665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	5.3E-7	12	64	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 227 aa Download sequence Send to blast
MGGGSTSIFG SDKPEPKWDS VSSYCRQHRA DRGPVQCRKC WSNMISDFKK IKTWESQADG 60 SSESYWIISN NLRREKRLPD SFDRKVYNVL DGKEVSAEAY QLALVTIITD DKFGYGIETV 120 EEEKEEENDD VSHTGEYTME DDVLPPATEE VGSNPLKEGD VKDKKAKSIP SPSPISGKLE 180 VFQKFALFST RTSAHTLTQT SVPTLFSCLI CNSQSTCCSF TNIRSN*

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975515	1e-147	HG975515.1 Solanum lycopersicum chromosome ch03, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016567545.1	1e-108	PREDICTED: trihelix transcription factor ASR3-like
TrEMBL	A0A2G2Y592	1e-123	A0A2G2Y592_CAPAN; Uncharacterized protein
STRING	PGSC0003DMT400036757	4e-92	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1786	24	60

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33550.1	7e-35	Trihelix family protein