PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA00g81450
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family bHLH
Protein Properties Length: 526aa    MW: 58631.9 Da    PI: 6.7002
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA00g81450genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.71e-13303346755
                 HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                   Er+RR+ri+++++ Lr l+P+ +      K++K++iL  A++YI++Lq
  CA00g81450 303 VTERKRRNRIKDGLFALRALVPNiS------KMDKVAILGDAIDYINELQ 346
                 57*********************66......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.5E-208157IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088815.605296345IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.49E-17298364IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.38E-14298350No hitNo description
SMARTSM003531.7E-15302351IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.1E-18303364IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.5E-11304346IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 526 aa     Download sequence    Send to blast
MERALEWLRP LVDSKNWEYC VVWKLGDDPS RFIEWMGCCC SGANGVDVNV KKENGGKQKV  60
TALCKDIQVQ HPIRTRACEA LAQFPLSISL YSGIQGEVVT SNEPKWINHA DISNSSLSHE  120
LKGTLVLIPV AGGLVELYSS KLIYKDQKTI NFIINLFKLG SEEANSSIAR KEDQVLDFFS  180
YEKLNFTAPL MQYATSFPST APHISQVSES SANPSIQGSS TGSTRSNELT LCHSPCDHLS  240
QNIPLSQSTE GYFEHTELQC SGNLSRMEGS AFPWKQENYI VAGDMFAVGK KRQKGPYQSK  300
NLVTERKRRN RIKDGLFALR ALVPNISKMD KVAILGDAID YINELQEKVK LYETELNEIE  360
AEFTNNEAAE MVLSDMTEIS KVTEPTNEKT QSSNTTNRTR MESPLYFALQ LEVNQIDARK  420
FLLKVSGSHK TGRFTQLMEA MSYLGLEIVN VSFTTSGGEI LSIFITEVNF ISQKTVEIIN  480
LLRNNQILLP YIFCLMLVSV NLSKCCTYVG SSKNCITFRG GGRAA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1288294GKKRQKG
2289308KKRQKGPYQSKNLVTERKRR
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754440.0HG975444.1 Solanum pennellii chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016554040.10.0PREDICTED: transcription factor bHLH90-like
TrEMBLA0A1U8FE710.0A0A1U8FE71_CAPAN; Uncharacterized protein
TrEMBLA0A2G3AG350.0A0A2G3AG35_CAPAN; transcription factor bHLH90-like
STRINGSolyc05g005300.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA99292227
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10610.13e-47bHLH family protein