PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA00g82830
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family B3
Protein Properties Length: 157aa    MW: 18332.3 Da    PI: 4.5333
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA00g82830genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B339.69.3e-13292384
                EE-..-HHHHT.T-EE--HHH.HTT.........---....--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
          B3  3 kvltpsdvlks.grlvlpkkfaeeh.........ggkke..esktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84
                k lt+sdv ++ grl l ++ ++++         +       +++++ +d+ g+ ++++++ +++ ++yvl + W++F ++++L+e+D v++ +
  CA00g82830  2 KNLTKSDVDEHqGRLLLNNEDVKKNlspilkkkfE---YlvDGIEVKTYDPMGKYYKMRFKTWGNYKSYVLLGSWRHFIQQHELEENDCVTIWM 92
                78999***999899***********9997765541...0447899***************99***************************99653 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd100177.60E-151103No hitNo description
SuperFamilySSF1019361.51E-172103IPR015300DNA-binding pseudobarrel domain
PfamPF023622.1E-9298IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.107.6E-162108IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.1543109IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 157 aa     Download sequence    Send to blast
MKNLTKSDVD EHQGRLLLNN EDVKKNLSPI LKKKFEYLVD GIEVKTYDPM GKYYKMRFKT  60
WGNYKSYVLL GSWRHFIQQH ELEENDCVTI WMFKHSVNGE FCFALTWKKD EDDDDEEEEE  120
EAARVVGTDP DAFRSEDEEA QVVGSDGWHG SRGIQE*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016541187.11e-103PREDICTED: uncharacterized protein LOC107841858
TrEMBLA0A2G2YUI31e-114A0A2G2YUI3_CAPAN; Uncharacterized protein
STRINGPGSC0003DMT4000009912e-46(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA64301214
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G03170.18e-21B3 family protein