PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA00g86330
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family LBD
Protein Properties Length: 176aa    MW: 19115 Da    PI: 9.2569
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA00g86330genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26052.21.7e-166702791
      DUF260 27 pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91
                 +++ +++k++G++ +l+l+++ p++ r+++++sl+yeA+ r+ +P+yG++g+++++++ql+  +
  CA00g86330  6 XNATLFLAKFYGRAGLLNLINSGPDHLRPAIFRSLLYEACGRIVNPIYGSTGLLTSGNWQLSADA 70
                5778999*****************************************************98765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508919.636180IPR004883Lateral organ boundaries, LOB
PfamPF031955.8E-12769IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MVAGSXNATL FLAKFYGRAG LLNLINSGPD HLRPAIFRSL LYEACGRIVN PIYGSTGLLT  60
SGNWQLSADA TSPSLKACDI RHVSKENNSG SELHKVRTRT RFKRVAGKPE LKKQSPEVDD  120
AARVMWSWCH KEDDVIGVGS PSRNSGLSQQ RTEEPSREGE SXXXXXXXXX AGEAG*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016563124.11e-107PREDICTED: LOB domain-containing protein 41-like
SwissprotQ9M8866e-39LBD41_ARATH; LOB domain-containing protein 41
TrEMBLA0A1U8G5441e-106A0A1U8G544_CAPAN; LOB domain-containing protein 41-like
STRINGPGSC0003DMT4000146302e-89(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8862494
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.12e-41LOB domain-containing protein 41