PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA00g87780
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family M-type_MADS
Protein Properties Length: 53aa    MW: 5826.91 Da    PI: 11.8226
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA00g87780genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF48.51.1e-152052133
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT- CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCda 33
                k+i+n+   +vtfskRr g++KKA+EL++L++a
  CA00g87780 20 KPIDNQNSIHVTFSKRRLGLFKKASELCILTGA 52
                78****************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554556.02E-141252IPR002100Transcription factor, MADS-box
SMARTSM004322.2E-71252IPR002100Transcription factor, MADS-box
PROSITE profilePS5006616.5541252IPR002100Transcription factor, MADS-box
CDDcd001206.10E-151352No hitNo description
PRINTSPR004041.1E-91434IPR002100Transcription factor, MADS-box
PfamPF003191.3E-132252IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-93449IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 53 aa     Download sequence    Send to blast
MNVNTNVVKK TKGRRKTAIK PIDNQNSIHV TFSKRRLGLF KKASELCILT GA*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016549469.11e-27PREDICTED: agamous-like MADS-box protein AGL62
TrEMBLA0A1U8EZY03e-26A0A1U8EZY0_CAPAN; agamous-like MADS-box protein AGL62
TrEMBLA0A2G2VF332e-26A0A2G2VF33_CAPBA; Uncharacterized protein
TrEMBLA0A2G2VF351e-26A0A2G2VF35_CAPBA; Agamous-like MADS-box protein AGL62
STRINGPGSC0003DMT4000131052e-20(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21342252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36590.13e-14M-type_MADS family protein