PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA00g87840
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family B3
Protein Properties Length: 417aa    MW: 48127.9 Da    PI: 9.9156
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA00g87840genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B341.91.8e-13491201799
                 E--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
          B3  17 vlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                  +p  f  ++ +g+   +++  +  + g++W+vk+  +++    +l++GW +Fv++++L+ gD ++F+++g    e+ v+vf++
  CA00g87840  49 KIPIAFS-KYlKGI---NQEHAILRRAGKKWRVKV--NRR----LLGEGWAKFVEEHDLQLGDLLIFRHEGA--LEFEVSVFDS 120
                 5777776.554444...345677789*********..666....6***********************8775..5559999986 PP
2B336.21.1e-11187272595
                 -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
          B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                 +++++ l+++ + lp +fa+++g+ +++  ++t++d + rsW++ l    ++ ++++++ W +F+  n LkegD ++++ +  +++++ ++
  CA00g87840 187 TITPYCLSRDHVQLPVPFARDNGLAERK-CMITIRD-ELRSWKLIL--YSSGAHTYISGTWCKFCITNCLKEGDQIMLEIVA-NGKNPILR 272
                 4689999***************999766.4888888.78*******..8888889************************876.55556655 PP
3B351.32.1e-16296374587
                 -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
          B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                  +++++  + +l+lp  fa+ +g+   + ++++l+de+grsW+v+l     + r+ +tkGW++F +an +++gD+  F+l+++
  CA00g87840 296 VIKPYAVIRPLLYLPSAFARPNGLM--RRTKMILRDEKGRSWSVQL--GPVGPRFGITKGWRQFREANAVQVGDTYKFELIDN 374
                 45666667778***********988..5569***************..99999**************************9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.44933121IPR003340B3 DNA binding domain
SMARTSM010191.3E-634121IPR003340B3 DNA binding domain
CDDcd100172.23E-1236119No hitNo description
Gene3DG3DSA:2.40.330.102.5E-1636121IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.32E-1537121IPR015300DNA-binding pseudobarrel domain
PfamPF023629.6E-1149120IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.3E-13181273IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.06E-15181273IPR015300DNA-binding pseudobarrel domain
CDDcd100171.67E-10182274No hitNo description
PROSITE profilePS5086310.25183276IPR003340B3 DNA binding domain
SMARTSM010191.6E-12184277IPR003340B3 DNA binding domain
PfamPF023622.8E-10187273IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.6E-20287383IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-20292383IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.353292385IPR003340B3 DNA binding domain
CDDcd100175.78E-15293384No hitNo description
SMARTSM010195.7E-14293385IPR003340B3 DNA binding domain
PfamPF023626.4E-15296374IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    Send to blast
MKVTFFVEKI KIEKKGIFFE IIADHMKIQI QDIDEKVNTS SNFCFSFGKI PIAFSKYLKG  60
INQEHAILRR AGKKWRVKVN RRLLGEGWAK FVEEHDLQLG DLLIFRHEGA LEFEVSVFDS  120
NQFERKYKQI PKGVNEAGEE IDHNCKFTSQ AKTTEKSKLD IKSPHKVFPK VEAEENMPLG  180
RPHFIYTITP YCLSRDHVQL PVPFARDNGL AERKCMITIR DELRSWKLIL YSSGAHTYIS  240
GTWCKFCITN CLKEGDQIML EIVANGKNPI LRFYGKKSAN VLASTSANAD SQFVTVIKPY  300
AVIRPLLYLP SAFARPNGLM RRTKMILRDE KGRSWSVQLG PVGPRFGITK GWRQFREANA  360
VQVGDTYKFE LIDNGTIPIA YFRCEYMFTS LSFHYIPPTY ICFIFFYFAT KSIRKW*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754471e-76HG975447.1 Solanum pennellii chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016549348.10.0PREDICTED: B3 domain-containing protein REM17-like isoform X3
TrEMBLA0A2G3ANL60.0A0A2G3ANL6_CAPAN; Uncharacterized protein
STRINGSolyc08g006190.1.11e-164(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32215171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26680.13e-41B3 family protein