PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA00g88980
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family ERF
Protein Properties Length: 138aa    MW: 14995.5 Da    PI: 7.353
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA00g88980genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP237.75e-1268108147
         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaai 47 
                 s+ykGV   + +grW A+I++      ++r++lg+f  ++eAa+a++
  CA00g88980  68 SKYKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEENEAARAYD 108
                 89****9888.8*********3.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.19E-1968117No hitNo description
SuperFamilySSF541711.96E-1268110IPR016177DNA-binding domain
PfamPF008479.4E-868108IPR001471AP2/ERF domain
PROSITE profilePS5103214.84269109IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.0E-1569110IPR001471AP2/ERF domain
SMARTSM003804.6E-1269128IPR001471AP2/ERF domain
PRINTSPR003675.0E-57081IPR001471AP2/ERF domain
PRINTSPR003675.0E-590106IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 138 aa     Download sequence    Send to blast
MEGTSSIDQE STTSDSLSIA PAAPSQQPSM MTTTKPPESL CRMGSGTSSM IIDGENGVEA  60
ESRKLPSSKY KGVVPQPNGR WGAQIYEKHQ RVWLGTFNEE NEAARAYDVX XGAATLLLIS  120
NPYLRIKKVM MMWKSLS*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor of flowering time on long day plants. Acts directly on FT expression by binding 5'-CAACA-3' and 5'-CACCTG-3 sequences. Functionally redundant with TEM2. {ECO:0000269|PubMed:18718758}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Expressed with a circadian rhythm showing a peak at dawn. {ECO:0000269|PubMed:18718758}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY7278301e-169AY727830.1 Capsicum annuum RAV transcription factor (RAV1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016548054.11e-66PREDICTED: AP2/ERF and B3 domain-containing transcription factor RAV1
SwissprotQ9C6M52e-42RAVL1_ARATH; AP2/ERF and B3 domain-containing transcription repressor TEM1
TrEMBLA0A2G2YCD65e-95A0A2G2YCD6_CAPAN; AP2/ERF and B3 domain-containing transcription factor ARF14
STRINGXP_009613275.14e-54(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1905133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25560.15e-41RAV family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Choi D, et al.
    iNID: an analytical framework for identifying network models for interplays among developmental signaling in Arabidopsis.
    Mol Plant, 2014. 7(5): p. 792-813
    [PMID:24380880]
  3. Sgamma T,Jackson A,Muleo R,Thomas B,Massiah A
    TEMPRANILLO is a regulator of juvenility in plants.
    Sci Rep, 2014. 4: p. 3704
    [PMID:24424565]
  4. Matías-Hernández L,Aguilar-Jaramillo AE,Marín-González E,Suárez-López P,Pelaz S
    RAV genes: regulation of floral induction and beyond.
    Ann. Bot., 2014. 114(7): p. 1459-70
    [PMID:24812253]
  5. Marín-González E, et al.
    SHORT VEGETATIVE PHASE Up-Regulates TEMPRANILLO2 Floral Repressor at Low Ambient Temperatures.
    Plant Physiol., 2015. 169(2): p. 1214-24
    [PMID:26243615]
  6. Matías-Hernández L, et al.
    TEMPRANILLO Reveals the Mesophyll as Crucial for Epidermal Trichome Formation.
    Plant Physiol., 2016. 170(3): p. 1624-39
    [PMID:26802039]