PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA00g92960
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family M-type_MADS
Protein Properties Length: 200aa    MW: 22615.2 Da    PI: 10.3331
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA00g92960genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF72.34e-231563248
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T..TSEEEE CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss..tgklye 48
                +ien+sn qvtfskRr+g++KKA+EL++LC+ae+a+++fs+   +k+y 
  CA00g92960 15 KIENESNLQVTFSKRRAGLFKKASELCTLCGAEIAIVVFSPgkANKVYS 63
                69*************************************9722456665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.5E-28667IPR002100Transcription factor, MADS-box
PROSITE profilePS5006621.278654IPR002100Transcription factor, MADS-box
CDDcd002652.38E-31777No hitNo description
SuperFamilySSF554555.36E-24779IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-15828IPR002100Transcription factor, MADS-box
PfamPF003191.7E-251564IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-152843IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-154364IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MPRRRKGQKR VDIVKIENES NLQVTFSKRR AGLFKKASEL CTLCGAEIAI VVFSPGKANK  60
VYSFGHPSVE LLVDRFLRRD LPPPNNEGRH NHLLMNHRNV VLRELNKEVM NMEEILQMEK  120
AHGESILEIR RRANGGWWEA PINALNLSQL KQLMEAMEFL KQDVEKEAQQ QQMVTNVGLP  180
FLTFGSALSP TNGARAISS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
115PRRRK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016554465.11e-115PREDICTED: agamous-like MADS-box protein AGL62
TrEMBLA0A2G2XTT71e-144A0A2G2XTT7_CAPAN; Uncharacterized protein
STRINGSolyc01g106730.1.11e-87(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20424223
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.13e-49AGAMOUS-like 62