PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA00g92970

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

M-type_MADS

Protein Properties

Length: 199aa MW: 22167.6 Da PI: 10.8609

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA00g92970	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	65.1	7.2e-21	16	62	3	49
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 +n+s+ qvtfskRr+g++KK +EL++LC+ae+a+++fs+ k+y + CA00g92970 16 MQNESKLQVTFSKRRAGLFKKVSELCTLCGAEIAIVVFSPGRKVYSF 62 5799*****************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	1.4E-27	6	65	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	22.497	6	66	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	2.49E-24	7	78	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.7E-17	8	28	IPR002100	Transcription factor, MADS-box
CDD	cd00265	1.45E-30	8	75	No hit	No description
Pfam	PF00319	6.4E-24	15	62	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.7E-17	28	43	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.7E-17	43	64	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 199 aa Download sequence Send to blast
MTRRSKDRQR IDIAKMQNES KLQVTFSKRR AGLFKKVSEL CTLCGAEIAI VVFSPGRKVY 60 SFGHPSVELL VDRFLGRNLP PPNNEGRHNH LLVNHQNAGL RELNKKKARG ESILDIRRAN 120 GGWWEAPINA LNLSQLQQLM EAMKFLKQDV EKEAQQLQMV TNVGLPFLTF GSALSPTYGA 180 RACSTHGLNV GATFANRV*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. Required for suppression of cellularization and promotion of nuclear proliferation during early endosperm development. The FERTILIZATION-INDEPENDENT SEED (FIS) polycomb complex is required for suppression of ALG62 expression at the end of the syncytial phase of endosperm development. {ECO:0000269\|PubMed:18334668}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016554465.1	1e-131	PREDICTED: agamous-like MADS-box protein AGL62
Swissprot	Q9FKK2	4e-47	AGL62_ARATH; Agamous-like MADS-box protein AGL62
TrEMBL	A0A2G2XU83	1e-138	A0A2G2XU83_CAPAN; Agamous-like MADS-box protein AGL62
STRING	Solyc01g106730.1.1	2e-86	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA204	24	223

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60440.1	2e-49	AGAMOUS-like 62

Publications ? help Back to Top
Xu W, et al. Endosperm and Nucellus Develop Antagonistically in Arabidopsis Seeds. Plant Cell, 2016. 28(6): p. 1343-60 [PMID:27233529] Figueiredo DD,Batista RA,Roszak PJ,Köhler C Auxin production couples endosperm development to fertilization. Nat Plants, 2015. 1: p. 15184 [PMID:27251719] Figueiredo DD,Batista RA,Roszak PJ,Hennig L,Köhler C Auxin production in the endosperm drives seed coat development in Arabidopsis. Elife, 2017. [PMID:27848912] Fiume E,Coen O,Xu W,Lepiniec L,Magnani E Growth of the Arabidopsis sub-epidermal integument cell layers might require an endosperm signal. Plant Signal Behav, 2017. 12(8): p. e1339000 [PMID:28613109] Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]