PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA00g93190
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family M-type_MADS
Protein Properties Length: 210aa    MW: 23443.1 Da    PI: 10.6139
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA00g93190genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF76.22.4e-241562249
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                +i+n+s+ qvtfskRr+g++KKA+EL++LC+ae+a++ifs+ gk+y +
  CA00g93190 15 KIQNESKLQVTFSKRRAGLFKKASELCTLCGAEIAIVIFSPGGKVYSF 62
                69********************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.2E-32665IPR002100Transcription factor, MADS-box
PROSITE profilePS5006625.133666IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.57E-26788IPR002100Transcription factor, MADS-box
CDDcd002653.32E-34775No hitNo description
PRINTSPR004041.4E-19828IPR002100Transcription factor, MADS-box
PfamPF003192.2E-261562IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-192843IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-194364IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MTRRSKGRQR IDIAKIQNES KLQVTFSKRR AGLFKKASEL CTLCGAEIAI VIFSPGGKVY  60
SFGHPSVELL VDRFLGRNLP PPNNAGHQNH LLMNHRNAGL RELNKKVMDM EEIFRMEKAR  120
GESILDIRRA NGGWWEAPIN ALNLSQLQQL MEAMKFLKKD IEKEAQQLQM ATYVGLPFLT  180
FGSSLSPTYG DRASSTHGLN VGATFANRV*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016554465.11e-154PREDICTED: agamous-like MADS-box protein AGL62
TrEMBLA0A2G2XTR91e-154A0A2G2XTR9_CAPAN; Uncharacterized protein
STRINGSolyc01g106730.1.12e-91(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20424223
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.18e-52AGAMOUS-like 62