PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA00g94300
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family M-type_MADS
Protein Properties Length: 195aa    MW: 21919.8 Da    PI: 6.6814
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA00g94300genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF51.41.4e-162069149
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-.TTSEEEEE CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifs.stgklyey 49
                k+i+n+  r+vtfsk r g++K A+EL++L++ae+ +++ s ++++l+++
  CA00g94300 20 KPIDNQNSRHVTFSKHRLGLFKNASELCILTGAEIIILVQSlKRQRLFTF 69
                78*************************************99567889888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.3E-141272IPR002100Transcription factor, MADS-box
PROSITE profilePS5006616.8621260IPR002100Transcription factor, MADS-box
SuperFamilySSF554558.89E-171484IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-81434IPR002100Transcription factor, MADS-box
CDDcd002661.97E-181580No hitNo description
PfamPF003194.8E-162269IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-83449IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MNVNTNVVKK TQRQRKISIK PIDNQNSRHV TFSKHRLGLF KNASELCILT GAEIIILVQS  60
LKRQRLFTFG HHSADAVIDH LEAEKKKKEN IEEEKLVNID DNNNGGYWWN EPIDTKGIDE  120
LEEFMVALEN LKKNVTTRVD ELSMLNGSSS SNSTVKIARL GAEDQFLNQV AIVYCSSIVP  180
YELNSSGDGQ FLSN*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016549469.11e-103PREDICTED: agamous-like MADS-box protein AGL62
TrEMBLA0A2G2VF331e-116A0A2G2VF33_CAPBA; Uncharacterized protein
STRINGSolyc01g106700.2.17e-88(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21342252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.12e-19AGAMOUS-like 62