PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA00g95680

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

NF-YC

Protein Properties

Length: 122aa MW: 13325.9 Da PI: 4.4298

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA00g95680	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	57.9	2.3e-18	58	121	12	75
NF-YC 12 katdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlk 75 ++ f+++++ + ++++ ++e v++++aeaP+l++k ce+f+ el++rsw ++eenkrr l+ CA00g95680 58 GDERFQEQQISACSYQQMMIYNEGVSKVTAEAPMLFAKECEMFMQELAFRSWFNTEENKRRMLQ 121 456789999999999**********************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	1.01E-8	26	120	IPR009072	Histone-fold
Gene3D	G3DSA:1.10.20.10	3.8E-13	74	121	IPR009072	Histone-fold
Pfam	PF00808	1.1E-5	75	121	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 122 aa Download sequence Send to blast
LGTQCRYPTT IYFSSRNSID GEFSSGGGSV PNAGTLLPTP SAAADGGVLG VTTQGNQGDE 60 RFQEQQISAC SYQQMMIYNE GVSKVTAEAP MLFAKECEMF MQELAFRSWF NTEENKRRML 120 Q*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016566806.1	4e-80	PREDICTED: nuclear transcription factor Y subunit C-6-like
TrEMBL	A0A1U8G620	9e-79	A0A1U8G620_CAPAN; nuclear transcription factor Y subunit C-6-like

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63470.2	3e-17	nuclear factor Y, subunit C4