PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA00g96300
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family Dof
Protein Properties Length: 216aa    MW: 24011.4 Da    PI: 7.1235
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA00g96300genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof118.82e-371570661
      zf-Dof  6 lkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61
                 +cprC stntkfCyynnysl+qPryfCk+CrryWtkGG+lrnvP+Ggg+rk+++ 
  CA00g96300 15 PACPRCGSTNTKFCYYNNYSLTQPRYFCKGCRRYWTKGGSLRNVPIGGGCRKSRRG 70
                57**************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074783.0E-21760IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.5561569IPR003851Zinc finger, Dof-type
PfamPF027016.9E-321669IPR003851Zinc finger, Dof-type
PROSITE patternPS0136101753IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MERGTIWKSN VELAPACPRC GSTNTKFCYY NNYSLTQPRY FCKGCRRYWT KGGSLRNVPI  60
GGGCRKSRRG KSSSNIIHNH HHHELISRNL GHGVCLNPTN IDHHNQSTSS SLDHHHGPSI  120
DLALVYSNFL NSTNSKSSQP EDRQNPELPD DLLLPDQGVL VTPSFELSSM IDMEFVNSEL  180
GQESRLLGAG AGDGVDFYFS GIHEEKQNXG MSQDW*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2458171e-159AC245817.9 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-126l2 map 1, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016561878.11e-151PREDICTED: dof zinc finger protein DOF3.5-like
SwissprotQ9SVC53e-42DOF35_ARATH; Dof zinc finger protein DOF3.5
TrEMBLA0A2G2YK841e-153A0A2G2YK84_CAPAN; Dof zinc finger protein DOF3.7
STRINGPGSC0003DMT4000550522e-97(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA129631317
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G52440.18e-34Dof family protein