PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA00g96710
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family M-type_MADS
Protein Properties Length: 63aa    MW: 7246.31 Da    PI: 10.3211
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA00g96710genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF87.67e-281059251
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                +ien+  r vtfskRr+g+ KKA+ELS+LCda++a i++sstgklyeyss
  CA00g96710 10 KIENSQYRDVTFSKRRQGLVKKANELSILCDAQIATIVYSSTGKLYEYSS 59
                79**********************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.0E-35160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006628.146161IPR002100Transcription factor, MADS-box
PRINTSPR004049.6E-26323IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.79E-27361IPR002100Transcription factor, MADS-box
PfamPF003192.7E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004049.6E-262338IPR002100Transcription factor, MADS-box
PRINTSPR004049.6E-263859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 63 aa     Download sequence    Send to blast
MVRRKIEMNK IENSQYRDVT FSKRRQGLVK KANELSILCD AQIATIVYSS TGKLYEYSSN  60
NR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A9e-17161161MEF2C
5f28_B9e-17161161MEF2C
5f28_C9e-17161161MEF2C
5f28_D9e-17161161MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMADS-box transcription factor that acts with AGL42 and AGL72 in the control of flowering time. Promotes flowering at the shoot apical and axillary meristems. Seems to act through a gibberellin-dependent pathway. Interacts genetically with SOC1 and its expression is directly regulated by SOC1. {ECO:0000269|PubMed:21609362}.
UniProtProbable transcription factor.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020232325.16e-24MADS-box protein AGL42
SwissprotQ84NC21e-22MAD31_ORYSJ; MADS-box transcription factor 31
SwissprotQ9LT931e-22AGL71_ARATH; MADS-box protein AGL71
TrEMBLA0A2G2XJ254e-37A0A2G2XJ25_CAPAN; MADS-box transcription factor 31
STRINGBo7g098670.11e-22(Brassica oleracea)
STRINGMigut.O00478.1.p2e-22(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4024625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51870.24e-25AGAMOUS-like 71
Publications ? help Back to Top
  1. Schilling S, et al.
    Non-canonical structure, function and phylogeny of the Bsister MADS-box gene OsMADS30 of rice (Oryza sativa).
    Plant J., 2015. 84(6): p. 1059-72
    [PMID:26473514]