PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA01g00300

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

HD-ZIP

Protein Properties

Length: 154aa MW: 17641.5 Da PI: 10.2041

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA01g00300	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	64.1	2e-20	24	77	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 R++f++eq++ Le++F ++ p +++++LA++lgL+ rqV +WFqN+Ra+ k CA01g00300 24 MRRRFNDEQIKSLENMFSTESRPELRTKQQLARSLGLQPRQVAIWFQNKRARSK 77 699*************************************************99 PP
2	HD-ZIP_I/II	103.4	1.9e-33	25	112	3	90
HD-ZIP_I/II 3 krrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 +rr+++eq+k+LE++F++e++ e + K++lar+Lglqprqva+WFqn+RAR k+kqlE +y++L+ +yd+l ++ e L+ke+e+L + CA01g00300 25 RRRFNDEQIKSLENMFSTESRPELRTKQQLARSLGLQPRQVAIWFQNKRARSKSKQLELEYRMLQMSYDNLGSKYELLKKEHESLLLQ 112 79*********************************************************************************99755 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	5.43E-19	7	81	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.0E-18	14	79	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.459	19	79	IPR001356	Homeobox domain
SMART	SM00389	5.4E-16	21	83	IPR001356	Homeobox domain
Pfam	PF00046	5.5E-18	24	77	IPR001356	Homeobox domain
CDD	cd00086	1.66E-15	25	80	No hit	No description
PRINTS	PR00031	4.0E-6	50	59	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	54	77	IPR017970	Homeobox, conserved site
PRINTS	PR00031	4.0E-6	59	75	IPR000047	Helix-turn-helix motif
Pfam	PF02183	8.4E-10	79	113	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 154 aa Download sequence Send to blast
MPPTNSDIWG QSMSSSIKKC KDSMRRRFND EQIKSLENMF STESRPELRT KQQLARSLGL 60 QPRQVAIWFQ NKRARSKSKQ LELEYRMLQM SYDNLGSKYE LLKKEHESLL LQVIFIYSLS 120 FLGICVVGGG ANKGKFCWPI SVNCVTISSK SFC*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription activator that may act as growth regulators in response to water deficit. {ECO:0000269\|PubMed:15604708, ECO:0000269\|PubMed:8771791}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By water deficit, by abscisic acid (ABA) and by salt stress. {ECO:0000269\|PubMed:16055682, ECO:0000269\|PubMed:8771791}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP009261	3e-97	AP009261.1 Solanum lycopersicum genomic DNA, chromosome 8, clone: C08HBa0005L01, complete sequence.
GenBank	HG975520	3e-97	HG975520.1 Solanum lycopersicum chromosome ch08, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016552550.1	5e-75	PREDICTED: homeobox-leucine zipper protein ATHB-7-like
Swissprot	P46897	1e-32	ATHB7_ARATH; Homeobox-leucine zipper protein ATHB-7
TrEMBL	A0A1U8FA08	1e-73	A0A1U8FA08_CAPAN; Homeobox-leucine zipper protein HOX6
TrEMBL	A0A2G3AD42	1e-73	A0A2G3AD42_CAPAN; homeobox-leucine zipper protein ATHB-7-like
STRING	Solyc08g083130.2.1	1e-62	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA10273	21	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46680.2	1e-30	homeobox 7

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhou SF, et al. Membrane-associated transcription factor peptidase, site-2 protease, antagonizes ABA signaling in Arabidopsis. New Phytol., 2015. 208(1): p. 188-97 [PMID:25919792]