PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA01g01280
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family WRKY
Protein Properties Length: 373aa    MW: 42501 Da    PI: 6.0892
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA01g01280genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.48e-30149209259
                 --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                 dDg++WrKYGqK++ g+++prsYYrCt++   +C+++k+v+rs++dp ++eitY+g+H+++
  CA01g01280 149 DDGFSWRKYGQKDILGAKYPRSYYRCTYRlmqNCWATKQVQRSDDDPALFEITYKGSHTCN 209
                 8***************************9999***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.6E-28142210IPR003657WRKY domain
SuperFamilySSF1182906.02E-26147210IPR003657WRKY domain
SMARTSM007745.7E-41148210IPR003657WRKY domain
PROSITE profilePS5081121.023149211IPR003657WRKY domain
PfamPF031064.8E-27149208IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MDCGFNWESN SLINELTQGL EHAKQLRASF SYDKIQELDF HLQMIFSSFE KSLSILKWND  60
TVTQSPLLIA PLVSTGAPES SISVDDNNNN NVSSEIPHVG YGEGTVYADV TPKMDDQDFK  120
YVSKKRKQMP TWSEQVRVNA ENGYERPTDD GFSWRKYGQK DILGAKYPRS YYRCTYRLMQ  180
NCWATKQVQR SDDDPALFEI TYKGSHTCNQ TFHSATQLKS PEKHKLKKQA NNPRTIQSNQ  240
MLANFQANLR VNINDLDKKE ATSSFQFSPT FSGFVSENLH FQRSQDDDNL VGGYSLSFVS  300
PTTPESSYFS LPSSHMNDSR RIHNVHHSES DLPDLFSANT SSTSSPIIGL EFPLERVELD  360
PNFPFHNSEF FR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A1e-19149208968OsWRKY45
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0092950.0AP009295.1 Solanum lycopersicum genomic DNA, chromosome 8, clone: C08SLe0011M12, complete sequence.
GenBankHG9755200.0HG975520.1 Solanum lycopersicum chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016555810.10.0PREDICTED: probable WRKY transcription factor 53
TrEMBLA0A2G3ADL90.0A0A2G3ADL9_CAPAN; Putative WRKY transcription factor 46
STRINGPGSC0003DMT4000316950.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA18432467
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.11e-55WRKY family protein