PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA01g01860
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family ERF
Protein Properties Length: 235aa    MW: 26123.3 Da    PI: 7.6131
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA01g01860genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP236.21.5e-112464245
         AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAaka 45
                ++ GV+  k+ g++ +eIrdp     + k+++lg+f+taeeA  a
  CA01g01860 24 HVIGVYKSKSLGKFTSEIRDPI----TkKTIWLGTFDTAEEASHA 64
                789*****************72....36**************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.2E-52464IPR001471AP2/ERF domain
PROSITE profilePS5103212.762491IPR001471AP2/ERF domain
SuperFamilySSF541716.28E-112573IPR016177DNA-binding domain
SMARTSM003800.00132797IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-122772IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MASLDTAGGS GRGKRIESYK RTTHVIGVYK SKSLGKFTSE IRDPITKKTI WLGTFDTAEE  60
ASHAFQSKKL EFQKLVQVKQ KQCTHKQTHF KEDRKSEKSV HAKQEHENLN CGLESVGGPR  120
IDFPMSNTSN GGTDRRINPH ETGIAEDAFH ACLSEKFYSQ SSKEVELQSN MSTDSCAGKN  180
QQGQEDDDKD LWMGKRVQLG DRTVMFSLKL GLPIIDNYGS LLGEFSSLDD LSII*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016566296.15e-82PREDICTED: uncharacterized protein LOC107864446
TrEMBLA0A2G3ADM01e-169A0A2G3ADM0_CAPAN; Uncharacterized protein
STRINGPGSC0003DMT4000317441e-81(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43411240
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28370.16e-13ERF domain protein 11