PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA01g01900

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

WRKY

Protein Properties

Length: 180aa MW: 20836.6 Da PI: 9.815

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA01g01900	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	101.3	5.6e-32	100	158	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDg++WrKYGqK vk+s++prsYYrCt+++C+vkk+++r ++d+++v++tYeg Hnh+ CA01g01900 100 LDDGFKWRKYGQKAVKNSTHPRSYYRCTHHTCNVKKQIQRHSKDTSIVVTTYEGIHNHP 158 59********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	9.3E-33	87	158	IPR003657	WRKY domain
SuperFamily	SSF118290	5.36E-28	92	159	IPR003657	WRKY domain
PROSITE profile	PS50811	28.334	95	160	IPR003657	WRKY domain
SMART	SM00774	1.3E-36	100	159	IPR003657	WRKY domain
Pfam	PF03106	3.0E-25	101	158	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 180 aa Download sequence Send to blast
MQNNYHSHVG LDCDNIDWAG LLSAGPSINN ESIATTSNVS INHRNMNTNM MEGGEQHQQQ 60 LLPQQQQHEV CRRDKGRIIK KRKYVPPRIA FHTRSTEDIL DDGFKWRKYG QKAVKNSTHP 120 RSYYRCTHHT CNVKKQIQRH SKDTSIVVTT YEGIHNHPCE KLMETLSPIL KQLQFLSRF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	9e-25	88	157	2	71	WRKY transcription factor 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975447	6e-74	HG975447.1 Solanum pennellii chromosome ch08, complete genome.
GenBank	HG975520	6e-74	HG975520.1 Solanum lycopersicum chromosome ch08, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016552679.1	1e-134	PREDICTED: probable WRKY transcription factor 75
Swissprot	Q8VWQ4	6e-55	WRK56_ARATH; Probable WRKY transcription factor 56
TrEMBL	A0A1U8F8W7	1e-133	A0A1U8F8W7_CAPAN; probable WRKY transcription factor 75
TrEMBL	A0A2G3ADM1	1e-133	A0A2G3ADM1_CAPAN; Putative WRKY transcription factor 56
STRING	PGSC0003DMT400032090	4e-81	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6374	24	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G64000.1	3e-56	WRKY DNA-binding protein 56