PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA01g02240

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

TALE

Protein Properties

Length: 630aa MW: 70609.5 Da PI: 6.9533

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA01g02240	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	17.6	6.7e-06	383	422	19	54
HHH..SSS--HHHHHHHHHHCTS-HHH..HHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterq..VkvWFqNrRak 54 Fe ++yps ++ LA+++gL+ +q V++WF N R + CA01g02240 383 FEHflHPYPSDVDKHILARQTGLSRSQafVSNWFINARVR 422 554459****************99988999****88 PP
2	BELL	117.8	5.1e-38	242	311	3	72
BELL 3 qelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 elqk+k+kLl++leeVd+rYk+y++q+++v+ssFeavag g+a++Y slA++a+SrhFrcL+d i+ qi CA01g02240 242 IELQKRKTKLLQMLEEVDRRYKHYCDQMKAVVSSFEAVAGNGAATVYSSLASRAMSRHFRCLRDGIVAQI 311 69******************************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	6.1E-52	169	309	IPR006563	POX domain
Pfam	PF07526	1.3E-46	176	307	IPR006563	POX domain
PROSITE profile	PS50071	9.41	361	426	IPR001356	Homeobox domain
SMART	SM00389	6.0E-5	364	430	IPR001356	Homeobox domain
CDD	cd00086	3.17E-10	364	427	No hit	No description
SuperFamily	SSF46689	8.55E-14	365	432	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.2E-25	367	432	IPR009057	Homeodomain-like
Pfam	PF05920	6.8E-16	381	422	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0048481	Biological Process	plant ovule development
GO:0005634	Cellular Component	nucleus
GO:0005829	Cellular Component	cytosol
GO:0009506	Cellular Component	plasmodesma
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 630 aa Download sequence Send to blast
MVTNTGYWFD GHSSNSSNPN MVNHQMQSFE TNPEMYNLTS GMEMIGFLPN TNDNPHPHML 60 WKGNSGVGGG PSLSKNDTSS SEQFYQHGNN MLVATEHWQH DDPSLRCVFP CEGNERPSQG 120 LSLSLCSSNP SSIGLQSFEL RHHHQQEIGL IHDGFLGKSA NLQPQNNHQG YFHHQIRDSK 180 YLGPAQALLS EFCSLGIKQN DDHSSSSKVQ KQQQQQKPHQ WQDHESASTS KKQLLLQSLD 240 IIELQKRKTK LLQMLEEVDR RYKHYCDQMK AVVSSFEAVA GNGAATVYSS LASRAMSRHF 300 RCLRDGIVAQ IKATKKAMGE KDSSSSTLIP GSTRGETPRL RVLDQTLRQQ KAFQQMNMME 360 THPWRPQRGL PERSVSVLRA WLFEHFLHPY PSDVDKHILA RQTGLSRSQA FVSNWFINAR 420 VRLWKPMVEE MYLEETKEEE ENLGSPNGSK ALDDMNVMNQ NNPHQSHIDQ EQKPNLVSID 480 SECISSIINH PHEKNDHTNK TSLDQHDHHH QVQTYGVRGG GQPFGAIELD FSTNMAYGTG 540 GDHGGMSNKN HLGVGGGVSL TLGLQQHGGS GSMGLSTFSS QPPHHHQSSL FYMNPRDDQV 600 QYSSLLDSEN QNLPYRNLMG AQLLHDLAG*

Sequence ? help Back to Top

Protein Sequence Length: 630 aa Download sequence Send to blast

MVTNTGYWFD GHSSNSSNPN MVNHQMQSFE TNPEMYNLTS GMEMIGFLPN TNDNPHPHML  60
WKGNSGVGGG PSLSKNDTSS SEQFYQHGNN MLVATEHWQH DDPSLRCVFP CEGNERPSQG  120
LSLSLCSSNP SSIGLQSFEL RHHHQQEIGL IHDGFLGKSA NLQPQNNHQG YFHHQIRDSK  180
YLGPAQALLS EFCSLGIKQN DDHSSSSKVQ KQQQQQKPHQ WQDHESASTS KKQLLLQSLD  240
IIELQKRKTK LLQMLEEVDR RYKHYCDQMK AVVSSFEAVA GNGAATVYSS LASRAMSRHF  300
RCLRDGIVAQ IKATKKAMGE KDSSSSTLIP GSTRGETPRL RVLDQTLRQQ KAFQQMNMME  360
THPWRPQRGL PERSVSVLRA WLFEHFLHPY PSDVDKHILA RQTGLSRSQA FVSNWFINAR  420
VRLWKPMVEE MYLEETKEEE ENLGSPNGSK ALDDMNVMNQ NNPHQSHIDQ EQKPNLVSID  480
SECISSIINH PHEKNDHTNK TSLDQHDHHH QVQTYGVRGG GQPFGAIELD FSTNMAYGTG  540
GDHGGMSNKN HLGVGGGVSL TLGLQQHGGS GSMGLSTFSS QPPHHHQSSL FYMNPRDDQV  600
QYSSLLDSEN QNLPYRNLMG AQLLHDLAG*

Functional Description ? help Back to Top
Source	Description
UniProt	Plays a major role in ovule patterning and in determination of integument identity via its interaction with MADS-box factors. Formation of complex with AG-SEP dimers negatively regulates the carpel identity process and favors the maintenance of ovule identity. BEL1-STM complex maintains the indeterminacy of the inflorescence meristem. Required, with SPL, for cytokinin-induced PIN1 expression in ovules (PubMed:22786869). {ECO:0000269\|PubMed:12244239, ECO:0000269\|PubMed:17693535, ECO:0000269\|PubMed:22786869}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF406700	0.0	AF406700.1 Solanum tuberosum BEL1-related homeotic protein 14 (Bel14) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016566562.1	0.0	PREDICTED: homeobox protein BEL1 homolog
Swissprot	Q38897	1e-133	BEL1_ARATH; Homeobox protein BEL1 homolog
TrEMBL	A0A1U8G5D2	0.0	A0A1U8G5D2_CAPAN; homeobox protein BEL1 homolog
STRING	PGSC0003DMT400032122	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5300	13	17

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G41410.1	1e-107	TALE family protein

Publications ? help Back to Top
Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules. Development, 2016. 143(3): p. 422-6 [PMID:26700684] Lozano-Sotomayor P, et al. Altered expression of the bZIP transcription factor DRINK ME affects growth and reproductive development in Arabidopsis thaliana. Plant J., 2016. 88(3): p. 437-451 [PMID:27402171]