PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA01g02540
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family bHLH
Protein Properties Length: 628aa    MW: 70308.5 Da    PI: 5.9923
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA01g02540genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.71.8e-12440483755
                 HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 + ErrRR++iN++f  L ++lP++      K++K++ L +++ Y+k+L+
  CA01g02540 440 ISERRRREKINERFMHLASMLPTS-----SKVDKVSLLDETIAYMKELE 483
                 67*********************8.....7****************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142154.2E-5015205IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088815.72433482IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.27E-12436487No hitNo description
SuperFamilySSF474591.31E-15437497IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-15438495IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.4E-16439488IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.3E-10440483IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009957Biological Processepidermal cell fate specification
GO:0010091Biological Processtrichome branching
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 628 aa     Download sequence    Send to blast
MAMGHQDQDG VPDNLRKQLA LAVRGIQWSY AIFWSTPVTQ PGVLEWSDGY YNGDIKTRKT  60
VQAEEVNEDE LGLQRTEQLR KLYSSLLTGE SEEDLQPQVK RPSAALSPED LTDTEWYFLV  120
CMSFVFNVGQ GLPGKILATN ETIWLCNAHQ AGSRVFSRSL LAKASICASI QTVICFPYLG  180
GVIELGVTEL VLEDPNLIQQ IKNSFLEADQ SVISKRPNYV SNDRNIVSQK LFYNILENDA  240
YPVEINNSSP HDSSNGFVAN QEAEDSLMVV DVIGETTQAQ SWKFMDDNMS NGANDSLNSS  300
DCISQNNANC EKLSPLSSGE KETKPCPLDH QEHDQKKLHP SDHQGDDAQY QAVLSTLLKT  360
SDQLTLGPHF RNSNKKSSFV GWRNNIQMQR VGTAQKLLKR VLLEVPRMHG GVIHKISKEN  420
RRKNNLLTPE VDDIDKNRVI SERRRREKIN ERFMHLASML PTSSKVDKVS LLDETIAYMK  480
ELERRVQDLE ARSARRSNDT AEQTSDNCGT SKFNDIKVSL PKKRKACDMD EIEPENCNGL  540
LKGSSADSIV INMIDKEVSI KMRCLWSEGL LLKIMEALTN LQMNCHTVQS SNIEGILSIA  600
IESKSAGSKK VAVGTIREAL QRVVWKS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A3e-161620512192Transcription factor MYC3
4rqw_B3e-161620512192Transcription factor MYC3
4rs9_A3e-161620512192Transcription factor MYC3
4yz6_A3e-161620512192Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1441446ERRRRE
2442447RRRREK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG7638620.0HG763862.1 Solanum tuberosum mRNA for JAF13 transcription factor.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016567159.10.0PREDICTED: transcription factor EGL1
TrEMBLA0A1U8GGF50.0A0A1U8GGF5_CAPAN; transcription factor EGL1
STRINGSolyc08g081140.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45762435
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41315.11e-178bHLH family protein