PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA01g02560

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

HB-other

Protein Properties

Length: 384aa MW: 42361.6 Da PI: 6.5082

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA01g02560	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	50.7	3.1e-16	86	139	1	54
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRak 54 ++k +++t + ++ Le++F++n++p++++r eL+k+l+L+ Vk+WFqNrR+ CA01g02560 86 KKKYHRHTLYKIQKLEACFKENPHPDEKARLELSKRLSLESWLVKFWFQNRRTL 139 789999**********************************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	4.7E-17	61	144	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.45E-15	70	142	IPR009057	Homeodomain-like
PROSITE profile	PS50071	14.495	83	143	IPR001356	Homeobox domain
SMART	SM00389	3.2E-10	85	147	IPR001356	Homeobox domain
CDD	cd00086	1.22E-12	86	143	No hit	No description
Pfam	PF00046	1.0E-13	86	139	IPR001356	Homeobox domain
PROSITE profile	PS50848	13.577	286	383	IPR002913	START domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0008289	Molecular Function	lipid binding

Sequence ? help Back to Top
Protein Sequence Length: 384 aa Download sequence Send to blast
MPTATVAQSQ LITSSLPQSI FNSSPLSLAL KPKMEGASDM SLLAKNFGAV AIERSDENDS 60 RSPGDHLDGG GSGDEMEAHV GSLSRKKKYH RHTLYKIQKL EACFKENPHP DEKARLELSK 120 RLSLESWLVK FWFQNRRTLI KTQLERHENS MLTQENDKLR LENMAMKEAM RVPNCHQCNG 180 QAILGEIHME EHHLKIENGR LRDEYSRICL MANKVSCRSL LSFNCPMLAG VGNFGLELVV 240 GRNDFGATNS VDTALPAVLD FSNGISSVAT SVISPRPTLN MTGMDVSFDK TMLIDLAFAA 300 MNELVKLAEI IGPLWFRSLD RNGEELNLEE YARSSPPCIG VKPANFTAEA TKATGTVMIN 360 SLGLVETLMD PSKWVDCVVC VCA*

Sequence ? help Back to Top

Protein Sequence Length: 384 aa Download sequence Send to blast

MPTATVAQSQ LITSSLPQSI FNSSPLSLAL KPKMEGASDM SLLAKNFGAV AIERSDENDS  60
RSPGDHLDGG GSGDEMEAHV GSLSRKKKYH RHTLYKIQKL EACFKENPHP DEKARLELSK  120
RLSLESWLVK FWFQNRRTLI KTQLERHENS MLTQENDKLR LENMAMKEAM RVPNCHQCNG  180
QAILGEIHME EHHLKIENGR LRDEYSRICL MANKVSCRSL LSFNCPMLAG VGNFGLELVV  240
GRNDFGATNS VDTALPAVLD FSNGISSVAT SVISPRPTLN MTGMDVSFDK TMLIDLAFAA  300
MNELVKLAEI IGPLWFRSLD RNGEELNLEE YARSSPPCIG VKPANFTAEA TKATGTVMIN  360
SLGLVETLMD PSKWVDCVVC VCA*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016567196.1	0.0	PREDICTED: homeobox-leucine zipper protein ROC5-like
TrEMBL	A0A1U8G782	0.0	A0A1U8G782_CAPAN; homeobox-leucine zipper protein ROC5-like
STRING	PGSC0003DMT400037055	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA13886	8	14

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G61150.1	8e-84	homeodomain GLABROUS 1