PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA01g03100
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family HSF
Protein Properties Length: 282aa    MW: 31241.4 Da    PI: 5.7661
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA01g03100genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind116.71.4e-36281192102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+y++++d++++elisw+e+g++f+v+++ efa+++LpkyFkh+nf+SFvRQLn+YgF+kv  ++         weF+++ F++g+k ll++i+
    CA01g03100  28 FLTKTYQLVDDPTMDELISWNEDGTTFIVWKPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDR---------WEFANECFRRGEKGLLRDIQ 115
                   9*****************************************************************99.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+k 
    CA01g03100 116 RRKI 119
                   *985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.6E-3819111IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.7E-5824117IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467855.44E-3625117IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004472.4E-3228117IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.8E-212851IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.8E-216678IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406791IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.8E-217991IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.20.5.1709.1E-4178201No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MVPSSXXXXX XXXXXAGAEN QRSLPTPFLT KTYQLVDDPT MDELISWNED GTTFIVWKPA  60
EFARDLLPKY FKHNNFSSFV RQLNTYGFRK VVPDRWEFAN ECFRRGEKGL LRDIQRRKIS  120
PAPAGTAVTP AVAAATPVMA VNAAQAVTVA VAPAVRIQIS SSNSGDEQVL SSNSSPAEEN  180
ERLRKENAQL SQELNRLRGL CSNVYNLMSN FTANPAEIPA GIPEGRALEL LLSLGVKRVR  240
RSNDEESDRE GRCQDQVQPH GSDVKSELDS GSAHHDDQQW I*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-271711719129Heat shock factor protein 1
5d5v_B1e-271711719129Heat shock factor protein 1
5d5v_D1e-271711719129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00432DAPTransfer from AT4G11660Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754472e-65HG975447.1 Solanum pennellii chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016567279.11e-160PREDICTED: heat stress transcription factor B-2b
SwissprotQ9T0D38e-80HFB2B_ARATH; Heat stress transcription factor B-2b
TrEMBLA0A2G3AE110.0A0A2G3AE11_CAPAN; Heat stress transcription factor B-2c
STRINGXP_009760921.11e-140(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21822460
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11660.18e-80HSF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]