PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA01g03410
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family ERF
Protein Properties Length: 240aa    MW: 26193.6 Da    PI: 4.8963
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA01g03410genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.64.8e-1678125355
         AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 ++G+r ++ +g+Wv+eIr+p++   ++r++lg++ t+e+Aa+a++ a+ +l+g
  CA01g03410  78 FRGIR-CR-SGKWVSEIREPRK---TRRIWLGTYPTPEMAAAAYDVAAMALKG 125
                 89**9.55.6*********843...5***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.9E-2577134IPR001471AP2/ERF domain
SMARTSM003801.7E-2677141IPR001471AP2/ERF domain
PROSITE profilePS5103219.59977133IPR001471AP2/ERF domain
SuperFamilySSF541711.96E-1778135IPR016177DNA-binding domain
CDDcd000185.13E-1678135No hitNo description
PfamPF008471.0E-978125IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MADSSQNPTK YSSQLNQHPA SSEITKIPFR LIPQPLPPPP PPPPVPPQPQ IQTTHNLVET  60
ISSSPSPSSN IGGKHAVFRG IRCRSGKWVS EIREPRKTRR IWLGTYPTPE MAAAAYDVAA  120
MALKGSDAII NFPNNINLYP SLPPSPSAAD IRKXXXXXXX TGEATSGTTQ PGTDDQSSEN  180
MHMNIETKDH EYIDEEALFD MPNLLVDMAE AMMVSPPRMD SPRSDDSPGN SDAESLWSY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A9e-1668138577Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754472e-56HG975447.1 Solanum pennellii chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016567672.11e-126PREDICTED: ethylene-responsive transcription factor ERF027-like
SwissprotQ9CAN91e-45ERF26_ARATH; Ethylene-responsive transcription factor ERF026
TrEMBLA0A2G3AE741e-167A0A2G3AE74_CAPAN; Ethylene-responsive transcription factor
STRINGSolyc08g080290.2.13e-81(Solanum lycopersicum)
STRINGPGSC0003DMT4000585874e-81(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA55322110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52020.13e-43ERF family protein